Intraspecific polymorphism in Metarhizium anisopliae var. anisopliae revealed by analysis of rRNA gene complex and mtDNA RFLPs

Intraspecific variation of 25 Metarhizium anisopliae vat. anisopliae isolates from various insect hosts and geographical origins was studied using RFLP analysis of the rDNA gene complex and the mtDNA. Heterologous and homologous mitochondrial and ribosomal probes were used to produce RFLP profiles of the isolates. The rDNA analysis allowed the differentiation of only seven isolates but provided evidence for the possible presence of introns in different sites of the nuclear rRNA-gene-complex. PCR amplification of the ITS1-5.8S-ITS2 rDNA region and the mtDNA regions corresponding to the SrRNA and the LrRNA, followed by restriction analysis of the PCR products underlined the conserved nature of these regions. By contrast, digestion with any one of endonucleases Hae III, Cfo I, Hpa II and subsequent RFLP analysis of the mtDNA, allowed the classification of the 25 isolates in 10 distinct groups. Double digestions using the restriction endonucleases Kpn I and Sac I led to maximum isolate differentiation, producing unique patterns for 16 isolates and subdividing the remainder into four groups of two or three isolates. This indicates the potential of mtDNA RFLP analysis as an excellent tool for fingerprinting M. anisopliae isolates and for studying genetic polymorphism

Chemical and UV mutagenesis in Zymomonas mobilis

Mutagenesis of the facultative anaerobe Zymomonas mobilis was accomplished by three different mutagens. Ultra-violet (UV) irradiation, whose effectiveness relies on misrepair of damaged DNA via an error-prone pathway, was a poor mutagen for this organism. Ethyl methane sulphonate (EMS) gave results very similar to UV-irradiation. N-methyl-N′-nitro-N-nitrosoguanidine (MNNG), which is believed to act by multiple mutagenic mechanisms, was the most powerful mutagen, always resulting in a large number of mutants of all types examined (i.e. auxotrophs, antibiotic resistant, heavy metal resistant and ultraviolet sensitive). Reversion frequencies of MNNG-induced mutants were very low. Evidence is provided that mutagenesis of Z. mobilis is affected by photoreactivation, adaptive response and error-prone repair mechanisms. Moreover, cells treated with alkylating agents and allowed to recover under anaerobic conditions clearly demonstrated that anaerobiosis plays a significant role in repair, but not in the induction of mutants. © 1992 Kluwer Academic Publishers

Barrage formation is independent from heterokaryon incompatibility in Verticillium dahliae

Barrage formation has been traditionally used for the assessment of mycelial compatibility in many fungi and has often been assumed to represent a non-self recognition phenotype that is directly associated with vegetative incompatibility in these organisms. In this work, the optimal growth conditions for large-scale studies of barrage formation in the asexual fungus Verticillium dahliae were determined, and they were used for the analysis of a diverse collection comprising 69 isolates of V. dahliae and related species. Barrage formation was very frequent on a defined complete agar medium within V. dahliae and between species of the genus. However, it was not correlated with the classification of V. dahliae isolates into Vegetative Compatibility Groups (VCGs) (based on the standard method using complementary nit mutants), as it was recorded at high frequencies both within and between V. dahliae VCGs. The high overall frequency of barrage formation demonstrated the presence of a higher level of mycelial incompatibility in V. dahliae than heterokaryon incompatibility assessed by forcing complementary nit mutants to form heterokaryons under selective conditions. The possible association of barrage formation with morphological characteristics of the fungal colonies was investigated, and a negative correlation of frequency and intensity of barrages with the isolates’ capacity for pigment production was detected. © 2014, Koninklijke Nederlandse Planteziektenkundige Vereniging

High-Throughput Assessment and Genetic Investigation of Vegetative Compatibility in Verticillium dahliae

Classification of isolates into vegetative compatibility groups (VCGs) using nitrate-non-utilizing (nit) mutants has been widely used for the characterization of Verticillium dahliae populations. However, certain methodological limitations prevent its application on a large scale. Furthermore, systematic investigations into the genetics underlying complementation tests between nit mutants of fungal isolates (i.e. heterokaryon formation) are lacking for Verticillium species. In this work, a diverse collection of 27 V. dahliae isolates - including representatives of all VCGs, both mating types, and heterokaryon self-incompatible isolates - was employed for the development and optimization of (i) a protocol for the rapid generation of nit mutants of V. dahliae isolates using UV-irradiation and (ii) a reproducible high-throughput procedure for complementation tests between nit mutants in liquid cultures using 96-well microplates. The genetic analysis of selected heterokaryons demonstrated that the frequently encountered 'weak' cross-reactions between VCGs and their subgroups can be actually heterokaryotic, implying the absence of strict genetic barriers between VCGs. In conclusion, we provide in this work an optimized method for the high-throughput VCG assignment of V. dahliae populations and a genetic analysis of heterokaryons that may have serious implications for the interpretation of VCG classification data. These advancements in the available methodology and the genetic background of vegetative compatibility grouping may contribute to a better understanding of the population biology of V. dahliae and possibly other mitosporic fungi. © 2014 Blackwell Verlag GmbH

Molecular characterization of the host-adapted pathogen Verticillium longisporum on the basis of a group-I intron found in the nuclear SSU-rRNA gene

Verticillium wilt of oilseed rape is caused by the host-adapted pathogen Verticillium longisporum comb. nov. With one set of nuclear SSU-rRNA gene primers, a PCR amplification product of ca. 2.5 kb was generated from all isolates of V. longisporum tested (36 from Europe, Japan, and USA), with the exception of two recombinant isolates. On the contrary, all the other phytopathogenic and nonphytopathogenic species of Verticillium tested (18 species, 46 isolates), with the exception of one isolate of V. lecanii and two of Cordyceps sp., generated a product of ca. 1.65 kb. Sequence analysis of the SSU-rRNA gene of two typical isolates of V. longisporum (wild radish, Japan, and oilseed rape, Germany) revealed that this dimorphism was due to the presence of an identical 839-bp intron located in a highly conserved insertion position (nt 1165 of Saccharomyces cerevisiae). The intron sequence was classified as group-I intron on the basis of conserved sequence and secondary structural elements. Primers designed from the 839-bp intron sequence amplified only the V. longisporum. Phylogenetic analysis based on SSU-rDNA sequences showed that V. longisporum was closely related to the genera of other filamentous Ascomycetes with fruiting bodies

Electrophoretic karyotype and gene mapping of the vascular wilt fungus Verticillium dahliae

The karyotype profile of Verticillium dahliae was resolved by pulse-field gel electrophoresis. It revealed 6 chromosomal bands that corresponded to 7 chromosomes as shown by RFLP analysis using as probe the telomeric consensus sequence (AACCCT)5. The number of chromosomes was further verified by the sensitivity of the hybridization signals to Bal31 digestion and the exclusion of interfering mitochondrial DNA signals. The corresponding sizes of the seven separated chromosomes were 6.7, 5.6, 4.1, 3.4, 3.1, 3.1 and 2.4 Mb, raising the total genomic size of the fungus to approximately 28.4 Mb. Twenty five homologous V. dahliae genes obtained either from randomly sequenced clones or PCR amplification were used as hybridization probes and were located onto the seven chromosomes. © 2005 Federation of European Microbiological Societies. Published by Elsevier B.V. All rights reserved

Improvement of Lysine Production by Analog-Sensitive and Auxotroph Mutants of the Acetylene-Utilizing Bacterium Gordona bronchialis (Rhodococcus bronchialis)

An acetylene utilizing Gordona (Rhodococcus) bronchialis strain, screened for the production of fine chemicals, was found to be capable of producing small amounts of lysine. Attempts to produce amino-acid analog-resistant and/or sensitive mutants and auxotrophs of this strain with increased lysine production were made following UV-irradiation or N-methyl-N′-nitro-N-nitrosoguanidine (MNNG) treatment. The bacterium exhibited surprisingly high resistance levels to the aforementioned mutagens which is attributed to highly effective inborn-repair systems. Natural resistance to high levels of S-(2-aminoethyl)-L-cysteine (AEC) (2%) was observed, in contrast with D, L-aspartic acid hydroxamate (AAH), L-lysine hydroxamate (LHX) and β-fluoropyruvate (FP). A variety of amino-acid analog-resistant (AAHr, LHXr) or analog-sensitive (FPs) mutants were produced following UV-irradiation or MNNG treatment. Similarly, a large number of auxotrophs (68) of different types were also obtained. From these, one FPs mono-auxotroph and two poly-auxotrophs (with at least one requirement for the aspartic acid family) showed an increased lysine production (∼1.8 g/L) comparable (4 g/L) to that found in other bacteria capable of utilizing long-chain hydrocarbons (1)