The CN Isotopic Ratios In Comets

Our aim is to determine the isotopic ratios (12)C/(13)C and (14)N/(15)N in a variety of comets and link these measurements to the formation and evolution of the solar system. The (12)C/(13)C and (14)N/(15)N isotopic ratios are measured for the CN radical by means of high-resolution optical spectra of the R branch of the B-X (0, 0) violet band. 23 comets from different dynamical classes have been observed, sometimes at various heliocentric and nucleocentric distances, in order to estimate possible variations of the isotopic ratios in parent molecules. The (12)C/(13)C and (14)N/(15)N isotopic ratios in CN are remarkably constant (average values of, respectively, 91.0 +/- 3.6 and 147.8 +/- 5.7) within our measurement errors, for all comets whatever their origin or heliocentric distance. While the carbon isotopic ratio does agree with the terrestrial value (89), the nitrogen ratio is a factor of two lower than the terrestrial value (272), indicating a fractionation in the early solar system, or in the protosolar nebula, common to all the comets of our sample. This points towards a common origin of the comets independently of their birthplaces, and a relationship between HCN and CN.NSFAstronom

Molecular Basis for the Anchoring of Proto-Oncoprotein Nup98 to the Cytoplasmic Face of the Nuclear Pore Complex

The cytoplasmic filament nucleoporins of the nuclear pore complex (NPC) are critically involved in nuclear export and remodeling of mRNA ribonucleoprotein particles and are associated with various human malignancies. Here, we report the crystal structure of the Nup98 C-terminal autoproteolytic domain, frequently missing from leukemogenic forms of the protein, in complex with the N-terminal domain of Nup82 and the C-terminal tail fragment of Nup159. The Nup82 β propeller serves as a noncooperative binding platform for both binding partners. Interaction of Nup98 with Nup82 occurs through a reciprocal exchange of loop structures. Strikingly, the same Nup98 groove promiscuously interacts with Nup82 and Nup96 in a mutually excusive fashion. Simultaneous disruption of both Nup82 interactions in yeast causes severe defects in mRNA export, while the severing of a single interaction is tolerated. Thus, the cytoplasmic filament network of the NPC is robust, consistent with its essential function in nucleocytoplasmic transport

Sedimentation record in the Konkan-Kerala Basin: implications for the evolution of the Western Ghats and the Western Indian passive margin

The Konkan and Kerala Basins constitute a major depocentre for sediment from the onshore hinterland of Western India and as such provide a valuable record of the timing and magnitude of Cenozoic denudation along the continental margin. This paper presents an analysis of sedimentation in the Konkan-Kerala Basin, coupledwith a mass balance study, and numerical modelling of flexural responses to onshore denudational unloading and o¡shore sediment loading in order to test competing conceptual models for the development of high-elevation passive margins. The Konkan-Kerala Basin contains an estimated 109,000 km<sup>3</sup>; of Cenozoic clastic sediment, a volume difficult to reconcile with the denudation of a downwarped rift flank onshore, and more consistent with denudation of an elevated rift flank. We infer from modelling of the isostatic response of the lithosphere to sediment loading offshore and denudation onshore that flexure is an important component in the development of the Western Indian Margin.There is evidence for two major pulses in sedimentation: an early phase in the Palaeocene, and a second beginning in the Pliocene. The Palaeocene increase in sedimentation can be interpreted in terms of a denudational response to the rifting between India and the Seychelles, whereas the mechanism responsible for the Pliocene pulse is more enigmatic

An Assessment of Dynamical Mass Constraints on Pre-Main Sequence Evolutionary Tracks

[abridged] We have assembled a database of stars having both masses determined from measured orbital dynamics and sufficient spectral and photometric information for their placement on a theoretical HR diagram. Our sample consists of 115 low mass (M < 2.0 Msun) stars, 27 pre-main sequence and 88 main sequence. We use a variety of available pre-main sequence evolutionary calculations to test the consistency of predicted stellar masses with dynamically determined masses. Despite substantial improvements in model physics over the past decade, large systematic discrepancies still exist between empirical and theoretically derived masses. For main-sequence stars, all models considered predict masses consistent with dynamical values above 1.2 Msun, some models predict consistent masses at solar or slightly lower masses, and no models predict consistent masses below 0.5 Msun but rather all models systematically under-predict such low masses by 5-20%. The failure at low masses stems from the poor match of most models to the empirical main-sequence below temperatures of 3800 K where molecules become the dominant source of opacity and convection is the dominant mode of energy transport. For the pre-main sequence sample we find similar trends. There is generally good agreement between predicted and dynamical masses above 1.2 Msun for all models. Below 1.2 Msun and down to 0.3 Msun (the lowest mass testable) most evolutionary models systematically under-predict the dynamically determined masses by 10-30% on average with the Lyon group models (e.g. Baraffe et al. 1998) predicting marginally consistent masses *in the mean* though with large scatter.Comment: accepted for publication in ApJ (2004

A Search for "Dwarf" Seyfert Nuclei. IV. Nuclei with Broad H-alpha Emission

We present the results of an optical spectroscopic survey designed to search for low-luminosity, "dwarf" Seyfert nuclei in a magnitude-limited sample of 486 bright, northern galaxies. Moderate-resolution spectra of exceptionally high quality were obtained in part to detect broad H-alpha emission, similar in character to, but much weaker than, the broad permitted lines that define type 1 Seyfert nuclei. One of the primary goals of the survey is to better quantify the faint end of the luminosity function of active galactic nuclei. This paper describes the subset of nuclei showing definite or probable evidence of broad H-alpha emission. We outline the procedures for determining the presence of this elusive spectral feature, steps for its quantitative measurement, and the associated systematic errors. Of the 211 emission-line galaxies classified as having Seyfert or LINER nuclei in our survey, the broad H-alpha line was detected with confidence in 34 objects, and with less certainty in another 12. Most of the detections are reported for the first time, and the detection rate represents a lower limit to the true incidence of active nuclei harboring a broad emission-line region. These statistics imply that broad-lined active nuclei are much more common than previously believed: they exist in at least 20% of all galaxies spectroscopically classified as "active" and in more than 10% of all luminous galaxies at the current epoch.Comment: To appear in the Astrophysical Journal Supplements. LaTex, 32 pages, plus an additional 14 figures and 3 tables. AASTex macro aaspp4.st

The Evolution of Supernovae in Circumstellar Wind-Blown Bubbles I. Introduction and One-Dimensional Calculations

Mass loss from massive stars (\ga 8 \msun) can result in the formation of circumstellar wind blown cavities surrounding the star, bordered by a thin, dense, cold shell. When the star explodes as a core-collapse supernova (SN), the resulting shock wave will interact with this modified medium around the star, rather than the interstellar medium. In this work we first explore the nature of the circumstellar medium around massive stars in various evolutionary stages. This is followed by a study of the evolution of SNe within these wind-blown bubbles. The evolution depends primarily on a single parameter $\Lambda$, the ratio of the mass of the dense shell to that of the ejected material. We investigate the evolution for different values of this parameter. We also plot approximate X-ray surface brightness plots from the simulations. Our results show that in many cases the SN remnant spends a significant amount of time within the bubble. The low density within the bubble can delay the onset of the Sedov stage, and may end up reducing the amount of time spent in the Sedov stage. The complicated density profile within the bubble makes it difficult to infer the mass-loss properties of the pre-SN star by studying the evolution of the resulting supernova remnant.Comment: 42 pages, 13 figures. Submitted to the Astrophysical Journal, Sept 200

Architecture of the fungal nuclear pore inner ring complex

The nuclear pore complex (NPC) constitutes the sole gateway for bidirectional nucleocytoplasmic transport. We present the reconstitution and interdisciplinary analyses of the ~425-kDa inner ring complex (IRC), which forms the central transport channel and diffusion barrier of the NPC, revealing its interaction network and equimolar stoichiometry. The Nsp1•Nup49•Nup57 channel nucleoporin hetero-trimer (CNT) attaches to the IRC solely through the adaptor nucleoporin Nic96. The CNT•Nic96 structure reveals that Nic96 functions as an assembly sensor that recognizes the three dimensional architecture of the CNT, thereby mediating the incorporation of a defined CNT state into the NPC. We propose that the IRC adopts a relatively rigid scaffold that recruits the CNT to primarily form the diffusion barrier of the NPC, rather than enabling channel dilation

Pore timing:the evolutionary origins of the nucleus and nuclear pore complex

The name “eukaryote” is derived from Greek, meaning “true kernel”, and describes the domain of organisms whose cells have a nucleus. The nucleus is thus the defining feature of eukaryotes and distinguishes them from prokaryotes (Archaea and Bacteria), whose cells lack nuclei. Despite this, we discuss the intriguing possibility that organisms on the path from the first eukaryotic common ancestor to the last common ancestor of all eukaryotes did not possess a nucleus at all—at least not in a form we would recognize today—and that the nucleus in fact arrived relatively late in the evolution of eukaryotes. The clues to this alternative evolutionary path lie, most of all, in recent discoveries concerning the structure of the nuclear pore complex. We discuss the evidence for such a possibility and how this impacts our views of eukaryote origins and how eukaryotes have diversified subsequent to their last common ancestor

Architecture of the symmetric core of the nuclear pore

INTRODUCTION: The nuclear pore complex (NPC) is the primary gateway for the transport of macromolecules between the nucleus and cytoplasm, serving as both a critical mediator and regulator of gene expression. NPCs are very large (~120 MDa) macromolecular machines embedded in the nuclear envelope, each containing ~1000 protein subunits, termed nucleoporins. Despite substantial progress in visualizing the overall shape of the NPC by means of cryoelectron tomography (cryo-ET) and in determining atomic-resolution crystal structures of nucleoporins, the molecular architecture of the assembled NPC has thus far remained poorly understood, hindering the design of mechanistic studies that could investigate its many roles in cell biology. RATIONALE: Existing cryo-ET reconstructions of the NPC are too low in resolution to allow for de novo structure determination of the NPC or unbiased docking of nucleoporin fragment crystal structures. We sought to bridge this resolution gap by first defining the interaction network of the NPC, focusing on the evolutionarily conserved symmetric core. We developed protocols to reconstitute NPC protomers from purified recombinant proteins, which enabled the generation of a high-resolution biochemical interaction map of the NPC symmetric core. We next determined high-resolution crystal structures of key nucleoporin interactions, providing spatial restraints for their relative orientation. By superposing crystal structures that overlapped in sequence, we generated accurate full-length structures of the large scaffold nucleoporins. Lastly, we used sequential unbiased searches, supported by the biochemical data, to place the nucleoporin crystal structures into a previously determined cryo-ET reconstruction of the intact human NPC, thus generating a composite structure of the entire NPC symmetric core. RESULTS: Our analysis revealed that the inner and outer rings of the NPC use disparate mechanisms of interaction. Whereas the structured coat nucleoporins of the outer ring form extensive surface contacts, the scaffold proteins of the inner ring are bridged by flexible sequences in linker nucleoporins. Our composite structure revealed a defined spoke architecture in which each of the eight spokes spans the nuclear envelope, with limited cross-spoke interactions. Most nucleoporins are present in 32 copies, with the exceptions of Nup170 and Nup188, which are present in 48 and 16 copies, respectively. Lastly, we observed the arrangement of the channel nucleoporins, which orient their N termini into two 16-membered rings, thus ensuring that their N-terminal FG repeats project evenly into the central transport channel. CONCLUSION: Our composite structure of the NPC symmetric core can be used as a platform for the rational design of experiments to investigate NPC structure and function. Each nucleoporin occupies multiple distinct biochemical environments, explaining how such a large macromolecular complex can be assembled from a relatively small number of genes. Our integrated, bottom-up approach provides a paradigm for the biochemical and structural characterization of similarly large biological mega-assemblies