Tessema et al., Wosera and Mugil microsatellite tree file

Tessema et al., Wosera and Mugil microsatellite tree fil

Binary data for Bayesian analyses (Mugil)

Binary data for Bayesian analyse of var repertoire in Mugil catchment area, Papua New Guine

Tessema et al., Wosera var repertoire tree file

Tessema et al., Wosera var repertoire tree fil

Tessema et al., Mugil var repertoire tree file

Tessema et al., Mugil var repertoire tree fil

Presence_absence data (Amele, Mugil and Wosera)

Presence_absence matrix for var DBLalpha types in Amele, Mugil and Wosera catchment areas of Papua New. Used for genetic diversity analyses

Bayesian cluster analysis of <i>P</i>. <i>falciparum</i> microsatellite haplotypes from Papua New Guinea.

<p>Individual ancestry coefficients are shown for (A) <i>P</i>. <i>falciparum</i> for <i>K</i> = 2–4 and (B) <i>P</i>. <i>vivax</i> for <i>K</i> = 4. Data generated in this study were analysed with <i>STRUCTURE</i> version 2.3.4 software [<a href="http://www.plosntds.org/article/info:doi/10.1371/journal.pntd.0003634#pntd.0003634.ref061" target="_blank">61</a>]. Each vertical bar represents an individual haplotype and the membership coefficient (Q) within each of the genetic populations, as defined by the different colours. A chain length of 100,000 Monte Carlo Markov Chain iterations was used after a burn in of 10,000 steps using the admixture model and correlated allele frequencies. Each vertical bar represents an individual haplotype and its membership to each population is defined by the different colours. Black borders separate the four catchments.</p

Multidimensional scaling analysis of <i>P</i>. <i>falciparum</i> and <i>P</i>. <i>vivax</i> microsatellite haplotypes from Papua New Guinea.

<p>Results of multidimensional scaling analysis (MDS) with cleaned datasets are shown for (A) <i>P</i>. <i>falciparum</i> and (B) <i>P</i>. <i>vivax</i>. Dots indicate individual microsatellite haplotypes and colours indicate the four sample catchment areas.</p

Estimates of genetic diversity of <i>P</i>. <i>falciparum</i> and <i>P</i>. <i>vivax</i> populations on the north coast of Papua New Guinea.

<p>n = number of isolates genotyped after exclusion of outliers; <i>H</i>_<i>e</i> = expected heterozygosity; <i>A</i> = Mean number of alleles, <i>R</i>_<i>s</i> = Allelic richness.</p><p>Estimates of genetic diversity of <i>P</i>. <i>falciparum</i> and <i>P</i>. <i>vivax</i> populations on the north coast of Papua New Guinea.</p

Estimates of multilocus linkage disequilibrium for <i>P</i>. <i>falciparum</i> and <i>P</i>. <i>vivax</i> populations on the north coast of Papua New Guinea.

<p><i>I</i>^<i>S</i>_<i>A</i> = Index of Association,</p><p>^<i>a</i> = all infections,</p><p>^<i>b</i> = single infections only</p><p>Estimates of multilocus linkage disequilibrium for <i>P</i>. <i>falciparum</i> and <i>P</i>. <i>vivax</i> populations on the north coast of Papua New Guinea.</p

Estimates of genetic differentiation among <i>P</i>. <i>falciparum</i> and <i>P</i>. <i>vivax</i> populations on the North Coast of Papua New Guinea.

<p>Jost’s <i>D</i> values lower left, <i>G</i>_<i>ST</i> values upper right</p><p>Estimates of genetic differentiation among <i>P</i>. <i>falciparum</i> and <i>P</i>. <i>vivax</i> populations on the North Coast of Papua New Guinea.</p