55 research outputs found
Dangling-bond charge qubit on a silicon surface
Two closely spaced dangling bonds positioned on a silicon surface and sharing
an excess electron are revealed to be a strong candidate for a charge qubit.
Based on our study of the coherent dynamics of this qubit, its extremely high
tunneling rate ~ 10^14 1/s greatly exceeds the expected decoherence rates for a
silicon-based system, thereby overcoming a critical obstacle of charge qubit
quantum computing. We investigate possible configurations of dangling bond
qubits for quantum computing devices. A first-order analysis of coherent
dynamics of dangling bonds shows promise in this respect.Comment: 17 pages, 3 EPS figures, 1 tabl
Silicon Atomic Quantum Dots Enable Beyond-CMOS Electronics
We review our recent efforts in building atom-scale quantum-dot cellular
automata circuits on a silicon surface. Our building block consists of silicon
dangling bond on a H-Si(001) surface, which has been shown to act as a quantum
dot. First the fabrication, experimental imaging, and charging character of the
dangling bond are discussed. We then show how precise assemblies of such dots
can be created to form artificial molecules. Such complex structures can be
used as systems with custom optical properties, circuit elements for
quantum-dot cellular automata, and quantum computing. Considerations on
macro-to-atom connections are discussed.Comment: 28 pages, 19 figure
Low Energy Electron Point Projection Microscopy of Suspended Graphene, the Ultimate "Microscope Slide"
Point Projection Microscopy (PPM) is used to image suspended graphene using
low-energy electrons (100-200eV). Because of the low energies used, the
graphene is neither damaged or contaminated by the electron beam. The
transparency of graphene is measured to be 74%, equivalent to electron
transmission through a sheet as thick as twice the covalent radius of
sp^2-bonded carbon. Also observed is rippling in the structure of the suspended
graphene, with a wavelength of approximately 26 nm. The interference of the
electron beam due to the diffraction off the edge of a graphene knife edge is
observed and used to calculate a virtual source size of 4.7 +/- 0.6 Angstroms
for the electron emitter. It is demonstrated that graphene can be used as both
anode and substrate in PPM in order to avoid distortions due to strong field
gradients around nano-scale objects. Graphene can be used to image objects
suspended on the sheet using PPM, and in the future, electron holography
Inferring the effective thickness of polyelectrolytes from stretching measurements at various ionic strengths: applications to DNA and RNA
By resorting to the thick-chain model we discuss how the stretching response
of a polymer is influenced by the self-avoidance entailed by its finite
thickness. The characterization of the force versus extension curve for a thick
chain is carried out through extensive stochastic simulations. The
computational results are captured by an analytic expression that is used to
fit experimental stretching measurements carried out on DNA and single-stranded
RNA (poly-U) in various solutions. This strategy allows us to infer the
apparent diameter of two biologically-relevant polyelectrolytes, namely DNA and
poly-U, for different ionic strengths. Due to the very different degree of
flexibility of the two molecules, the results provide insight into how the
apparent diameter is influenced by the interplay between the
(solution-dependent) Debye screening length and the polymers' ``bare''
thickness. For DNA, the electrostatic contribution to the effective radius,
, is found to be about 5 times larger than the Debye screening length,
consistently with previous theoretical predictions for highly-charged stiff
rods. For the more flexible poly-U chains the electrostatic contribution to
is found to be significantly smaller than the Debye screening length.Comment: iopart, 14 pages, 13 figures, to appear in J. Phys.: Condens. Matte
Elasticity of semiflexible polymers with and without self-interactions
A {\it new} formula for the force vs extension relation is derived from the
discrete version of the so called {\it worm like chain} model. This formula
correctly fits some recent experimental data on polymer stretching and some
numerical simulations with pairwise repulsive potentials. For a more realistic
Lennard-Jones potential the agreement with simulations is found to be good when
the temperature is above the temperature. For lower temperatures a
plateau emerges, as predicted by some recent experimental and theoretical
results, and our formula gives good results only in the high force regime. We
briefly discuss how other kinds of self-interactions are expected to affect the
elasticity of the polymer.Comment: 8 pages, 10 figure
Mesoscopic models for DNA stretching under force: new results and comparison to experiments
Single molecule experiments on B-DNA stretching have revealed one or two
structural transitions, when increasing the external force. They are
characterized by a sudden increase of DNA contour length and a decrease of the
bending rigidity. It has been proposed that the first transition, at forces of
60--80 pN, is a transition from B to S-DNA, viewed as a stretched duplex DNA,
while the second one, at stronger forces, is a strand peeling resulting in
single stranded DNAs (ssDNA), similar to thermal denaturation. But due to
experimental conditions these two transitions can overlap, for instance for
poly(dA-dT). We derive analytical formula using a coupled discrete worm like
chain-Ising model. Our model takes into account bending rigidity, discreteness
of the chain, linear and non-linear (for ssDNA) bond stretching. In the limit
of zero force, this model simplifies into a coupled model already developed by
us for studying thermal DNA melting, establishing a connexion with previous
fitting parameter values for denaturation profiles. We find that: (i) ssDNA is
fitted, using an analytical formula, over a nanoNewton range with only three
free parameters, the contour length, the bending modulus and the monomer size;
(ii) a surprisingly good fit on this force range is possible only by choosing a
monomer size of 0.2 nm, almost 4 times smaller than the ssDNA nucleobase
length; (iii) mesoscopic models are not able to fit B to ssDNA (or S to ss)
transitions; (iv) an analytical formula for fitting B to S transitions is
derived in the strong force approximation and for long DNAs, which is in
excellent agreement with exact transfer matrix calculations; (v) this formula
fits perfectly well poly(dG-dC) and -DNA force-extension curves with
consistent parameter values; (vi) a coherent picture, where S to ssDNA
transitions are much more sensitive to base-pair sequence than the B to S one,
emerges.Comment: 14 pages, 9 figure
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