Automated Voice Pathology Discrimination from Continuous Speech Benefits from Analysis by Phonetic Context

In contrast to previous studies that look only at discriminating pathological voice from the normal voice, in this study we focus on the discrimination between cases of spasmodic dysphonia (SD) and vocal fold palsy (VP) using automated analysis of speech recordings. The hypothesis is that discrimination will be enhanced by studying continuous speech, since the different pathologies are likely to have different effects in different phonetic contexts. We collected audio recordings of isolated vowels and of a read passage from 60 patients diagnosed with SD (N=38) or VP (N=22). Baseline classifiers on features extracted from the recordings taken as a whole gave a cross-validated unweighted average recall of up to 75% for discriminating the two pathologies. We used an automated method to divide the read passage into phone-labelled regions and built classifiers for each phone. Results show that the discriminability of the pathologies varied with phonetic context as predicted. Since different phone contexts provide different information about the pathologies, classification is improved by fusing phone predictions, to achieve a classification accuracy of 83%. The work has implications for the differential diagnosis of voice pathologies and contributes to a better understanding of their impact on speech

Association between Non-Suicidal Self-Injuries and Suicide Attempts in Chinese Adolescents and College Students: A Cross-Section Study

This study examined the association between non-suicidal self-injury (NSSI) and suicide attempts among Chinese adolescents and college students.A total sample of 2013 Chinese students were randomly selected from five schools in Wuhan, China, including 1101 boys and 912 girls with the age ranging between 10 and 24 years. NSSI, suicidal ideation, suicide attempts and depressive symptoms were measured by self-rated questionnaires. Self-reported suicide attempts were regressed on suicidal ideation and NSSI, controlling for participants' depressive symptoms, and demographic characteristics.The self-reported prevalence rates of NSSI, suicidal ideation, suicide attempts were 15.5%, 8.8%, and 3.5%, respectively. Logistic regression analyses indicated that NSSI was significantly associated with self-reported suicide attempts. Analyses examining the conditional association of NSSI and suicidal ideation with self-reported suicide attempts revealed that NSSI was significantly associated with greater risk of suicide attempts in those not reporting suicidal ideation than those reporting suicidal ideation in the past year.These findings highlight the importance of NSSI as a potentially independent risk factor for suicide attempts among Chinese/Han adolescents and college students

Investigation of atmospheric effects on retrieval of sun-induced fluorescence using hyperspectral imagery

Significant research progress has recently been made in estimating fluorescence in the oxygen absorption bands, however, quantitative retrieval of fluorescence data is still affected by factors such as atmospheric effects. In this paper, top-of-atmosphere (TOA) radiance is generated by the MODTRAN 4 and SCOPE models. Based on simulated data, sensitivity analysis is conducted to assess the sensitivities of four indicators—depth_absorption_band, depth_nofs-depth_withfs, radiance and Fs/radiance—to atmospheric parameters (sun zenith angle (SZA), sensor height, elevation, visibility (VIS) and water content) in the oxygen absorption bands. The results indicate that the SZA and sensor height are the most sensitive parameters and that variations in these two parameters result in large variations calculated as the variation value/the base value in the oxygen absorption depth in the O2-A and O2-B bands (111.4% and 77.1% in the O2-A band; and 27.5% and 32.6% in the O2-B band, respectively). A comparison of fluorescence retrieval using three methods (Damm method, Braun method and DOAS) and SCOPE Fs indicates that the Damm method yields good results and that atmospheric correction can improve the accuracy of fluorescence retrieval. Damm method is the improved 3FLD method but considering atmospheric effects. Finally, hyperspectral airborne images combined with other parameters (SZA, VIS and water content) are exploited to estimate fluorescence using the Damm method and 3FLD method. The retrieval fluorescence is compared with the field measured fluorescence, yielding good results (R2 = 0.91 for Damm vs. SCOPE SIF; R2 = 0.65 for 3FLD vs. SCOPE SIF). Five types of vegetation, including ailanthus, elm, mountain peach, willow and Chinese ash, exhibit consistent associations between the retrieved fluorescence and field measured fluorescence

Identification of new antibacterial targets in RNA polymerase of Mycobacterium tuberculosis by detecting positive selection sites

Bacterial RNA polymerase (RNAP) is an effective target for antibacterial treatment. In order to search new potential targets in RNAP of Mycobacterium, we detected adaptive selections of RNAP related genes in 13 strains of Mycobacterium by phylogenetic analysis. We first collected sequences of 17 genes including rpoA, rpoB, rpoC, rpoZ, and sigma factor A-M. Then maximum likelihood trees were constructed, followed by positive selection detection. We found that sigG shows positive selection along the clade (M. tuberculosis, M. bovis), suggesting its important evolutionary role and its potential to be a new antibacterial target. Moreover, the regions near 933Cys and 935His on the rpoB subunit of M. tuberculosis showed significant positive selection, which could also be a new attractive target for anti-tuberculosis drugs

Redefining America’s Postwar Urban Renewal at the Northgate of Springfield, MA

This project presents visions for an underutilized and overlooked district in Springfield, MA, developed by the Graduate Urban Design Studio in the spring of 2014. The area between downtown and the North End neighborhood has undergone major transformations in the 1950’s and 1960’s during America’s era of postwar urban renewal. Residential blocks were replaced by large office buildings and oversized streets left a ”no-man’s land”. The current rehabilitation of the Springfield’s Union Station into an intermodal transportation hub should draw new attention to the area as the northern gateway to downtown - the “Northgate”. Five visionary design proposals rethink and redefine America’s postwar urban renewal and show possible future scenarios to re-imagine and revitalize a unique urban district close to the heart of the City. The design strategies include new urban greenways and recreation, sustainable green infrastructure adaptations, urban agriculture and farming, housing and mixed-use commercial opportunities

Association between serum bisphenol A concentration and incident risk of hypertension

BackgroundPrevious studies have shown that bisphenol A exposure is associated with the risk of hypertension; however, most of them are cross-sectional and the conclusions are not consistent. ObjectiveTo evaluate the association between bisphenol A exposure and the incident risk of hypertension. MethodsBased on a nested case-control design involving 1990 subjects derived from the Dongfeng-Tongji cohort, a total of 1080 subjects were included in this study after excluding 887 hypertensive cases at baseline and 23 subjects with missing blood pressure data in follow-up visits. Epidemiological information was collected through questionnaire survey, and serum bisphenol A concentration was detected by high performance liquid chromatography tandem mass spectrometry. Logistic regression model was used to analyze the potential association between serum bisphenol A level and the risk of hypertension incidence, and linear regression model was used to analyze the association between serum bisphenol A level and blood pressure changes between baseline and follow-up. ResultsThe average age of the 1 080 participants was (62.03±7.45) years, of which 41.1% were male. During the follow-up period, a total of 477 (44.2%) developed hypertension. The median serum concentration of bisphenol A in the total population was 3.15 μg·L−1, and the baseline bisphenol A concentration in the new case group (3.24 μg·L−1) was higher than that in the control group (2.98 μg·L−1) (P0.05). ConclusionBisphenol A exposure is positively associated with the risk of hypertension

Greening Worcester: Planning and Designing Green Infrastructure Networks for Habitat, Recreation, and Landscape Interpretation:

This graduate studio focused on the creating green infrastructure networks in Worcester, Massachusetts which is the second most populated city in Massachusetts. The studio worked in conjunction with the EcoTarium, an innovative science museum in Worcester in order to link the City’s rich cultural, historic, and academic resources across a densely populated urban region; and expand opportunities for local residents to learn about urban ecology in their own neighborhoods. The studio project builds on the City’s open space plan goals by planning improved access to water resources, increased connectivity between existing parks and open space, and safer bicycle and pedestrian connections. The project also strives to improve water quality in the Blackstone River and reduce stormwater runoff by a series of green infrastructure improvements throughout the City. Finally, the project addresses the existing wayfinding challenges in Worcester to help visitors and local residents alike access the City’s historical, cultural, and natural resources

The effect of urbanization and exposure to multiple environmental factors on life-history traits and breeding success of Barn Swallows (Hirundo rustica) across China

In addition to landscape changes, urbanization also brings about changes in environmental factors that can affect wildlife. Despite the common referral in the published literature to multiple environmental factors such as light and noise pollution, there is a gap in knowledge about their combined impact. We developed a multidimensional environmental framework to assess the effect of urbanization and multiple environmental factors (light, noise, and temperature) on life-history traits and breeding success of Barn Swallows (Hirundo rustica) across rural to urban gradients in four locations spanning over 2500 ​km from North to South China. Over a single breeding season, we measured these environmental factors nearby nests and quantified landscape urbanization over a 1 ​km2 radius. We then analysed the relationships between these multiple environmental factors through a principal component analysis and conducted spatially explicit linear-mixed effects models to assess their effect on life-history traits and breeding success. We were particularly interested in understanding whether and how Barn Swallows were able to adapt to such environmental conditions associated with urbanization. The results show that there is significant variation in the exposure to environmental conditions experienced by Barn Swallows breeding across urbanization gradients in China. These changes and their effects are complex due to the behavioural responses ameliorating potential negative effects by selecting nesting sites that minimize exposure to environmental factors. However, significant relationships between landscape urbanization, exposure to environmental factors, and life-history traits such as laying date and clutch size were pervasive. Still, the impact on breeding success was, at least in our sample, negligible, suggesting that Barn Swallows are extremely adaptable to a wide range of environmental features

Discovery of a high-altitude ecotype and ancient lineage of Arabidopsis thaliana from Tibet

Arabidopsis thaliana (A. thaliana) has long been a model species for dicotyledon study, and was the first flowering plant to get its genome completed sequenced [1]. Although most wild A. thaliana are collected in Europe, several studies have found a rapid A. thaliana west-east expansion from Central Asia [2]. The Qinghai-Tibet Plateau (QTP) is close to Central Asia and known for its high altitude, unique environments and biodiversity [3]. However, no wild-type A. thaliana had been either discovered or sequenced from QTP. Studies on the A. thaliana populations collected under 2000 m asl have shown that the adaptive variations associated with climate and altitudinal gradients [4]. Hence a high-altitude A. thaliana provides a precious natural material to investigate the evolution and adaptation process. Here, we present the genome of a new ecotype of A. thaliana collected in the Gongga County, Tibet (4200 m asl) (Fig. 1a), to demonstrate its evolutionary history and adaptation to highaltitude regions