Modeling human observer detection in undersampled magnetic resonance imaging (MRI) reconstruction with total variation and wavelet sparsity regularization

Purpose: Task-based assessment of image quality in undersampled magnetic resonance imaging provides a way of evaluating the impact of regularization on task performance. In this work, we evaluated the effect of total variation (TV) and wavelet regularization on human detection of signals with a varying background and validated a model observer in predicting human performance. Approach: Human observer studies used two-alternative forced choice (2-AFC) trials with a small signal known exactly task but with varying backgrounds for fluid-attenuated inversion recovery images reconstructed from undersampled multi-coil data. We used a 3.48 undersampling factor with TV and a wavelet sparsity constraints. The sparse difference-of-Gaussians (S-DOG) observer with internal noise was used to model human observer detection. Results: We observed a trend that the human observer detection performance remained fairly constant for a broad range of values in the regularization parameter before decreasing at large values. A similar result was found for the normalized ensemble root mean squared error. Without changing the internal noise, the model observer tracked the performance of the human observers as the regularization was increased but overestimated the PC for large amounts of regularization for TV and wavelet sparsity, as well as the combination of both parameters. Conclusions: For the task we studied, the S-DOG observer was able to reasonably predict human performance with both TV and wavelet sparsity regularizers over a broad range of regularization parameters. We observed a trend that task performance remained fairly constant for a range of regularization parameters before decreasing for large amounts of regularization

Rapid dynamic speech imaging at 3 Tesla using combination of a custom vocal tract coil, variable density spirals and manifold regularization

Purpose: To improve dynamic speech imaging at 3 Tesla. Methods: A novel scheme combining a 16-channel vocal tract coil, variable density spirals (VDS), and manifold regularization was developed. Short readout duration spirals (1.3 ms long) were used to minimize sensitivity to off-resonance. The manifold model leveraged similarities between frames sharing similar vocal tract postures without explicit motion binning. Reconstruction was posed as a SENSE-based non-local soft weighted temporal regularization scheme. The self-navigating capability of VDS was leveraged to learn the structure of the manifold. Our approach was compared against low-rank and finite difference reconstruction constraints on two volunteers performing repetitive and arbitrary speaking tasks. Blinded image quality evaluation in the categories of alias artifacts, spatial blurring, and temporal blurring were performed by three experts in voice research. Results: We achieved a spatial resolution of 2.4mm2/pixel and a temporal resolution of 17.4 ms/frame for single slice imaging, and 52.2 ms/frame for concurrent 3-slice imaging. Implicit motion binning of the manifold scheme for both repetitive and fluent speaking tasks was demonstrated. The manifold scheme provided superior fidelity in modeling articulatory motion compared to low rank and temporal finite difference schemes. This was reflected by higher image quality scores in spatial and temporal blurring categories. Our technique exhibited faint alias artifacts, but offered a reduced interquartile range of scores compared to other methods in alias artifact category. Conclusion: Synergistic combination of a custom vocal-tract coil, variable density spirals and manifold regularization enables robust dynamic speech imaging at 3 Tesla.Comment: 30 pages, 10 figure

High-resolution three-dimensional hybrid MRI + low dose CT vocal tract modeling:A cadaveric pilot study

SummaryObjectivesMRI based vocal tract models have many applications in voice research and education. These models do not adequately capture bony structures (e.g. teeth, mandible), and spatial resolution is often relatively low in order to minimize scanning time. Most MRI sequences achieve 3D vocal tract coverage at gross resolutions of 2 mm3 within a scan time of <20 seconds. Computed tomography (CT) is well suited for vocal tract imaging, but is infrequently used due to the risk of ionizing radiation. In this cadaveric study, a single, extremely low-dose CT scan of the bony structures is blended with accelerated high-resolution (1 mm3) MRI scans of the soft tissues, creating a high-resolution hybrid CT-MRI vocal tract model.MethodsMinimum CT dosages were determined and a custom 16-channel airway receiver coil for accelerated high (1 mm3) resolution MRI was evaluated. A rigid body landmark based partial volume registration scheme was then applied to the images, creating a hybrid CT-MRI model that was segmented in Slicer.ResultsUltra-low dose CT produced images with sufficient quality to clearly visualize the bone, and exposed the cadaver to 0.06 mSv. This is comparable to atmospheric exposures during a round trip transatlantic flight. The custom 16-channel vocal tract coil produced acceptable image quality at 1 mm3 resolution when reconstructed from ∼6 fold undersampled data. High (1 mm3) resolution MR imaging of short (<10 seconds) sustained sounds was achieved. The feasibility of hybrid CT-MRI vocal tract modeling was successfully demonstrated using the rigid body landmark based partial volume registration scheme. Segmentations of CT and hybrid CT-MRI images provided more detailed 3D representations of the vocal tract than 2 mm3 MRI based segmentations.ConclusionsThe method described in this study indicates that high-resolution CT and MR image sets can be combined so that structures such as teeth and bone are accurately represented in vocal tract reconstructions. Such scans will aid learning and deepen understanding of anatomical features that relate to voice production, as well as furthering knowledge of the static and dynamic functioning of individual structures relating to voice production

A multispeaker dataset of raw and reconstructed speech production real-time MRI video and 3D volumetric images

Real-time magnetic resonance imaging (RT-MRI) of human speech production is enabling significant advances in speech science, linguistics, bio-inspired speech technology development, and clinical applications. Easy access to RT-MRI is however limited, and comprehensive datasets with broad access are needed to catalyze research across numerous domains. The imaging of the rapidly moving articulators and dynamic airway shaping during speech demands high spatio-temporal resolution and robust reconstruction methods. Further, while reconstructed images have been published, to-date there is no open dataset providing raw multi-coil RT-MRI data from an optimized speech production experimental setup. Such datasets could enable new and improved methods for dynamic image reconstruction, artifact correction, feature extraction, and direct extraction of linguistically-relevant biomarkers. The present dataset offers a unique corpus of 2D sagittal-view RT-MRI videos along with synchronized audio for 75 subjects performing linguistically motivated speech tasks, alongside the corresponding first-ever public domain raw RT-MRI data. The dataset also includes 3D volumetric vocal tract MRI during sustained speech sounds and high-resolution static anatomical T2-weighted upper airway MRI for each subject.Comment: 27 pages, 6 figures, 5 tables, submitted to Nature Scientific Dat