BIM_file

.bim file, generated by PLINK, used for genome wide association mapping in GEMM

FAM_file

.fam file, generated by PLINK, used for genome wide association mapping in GEMM

BED_file

.bed file, generated by PLINK, used for genome wide association mapping in GEMM

kinship_matrix

Kinship matrix, calculated in GEMMA, used for genome wide association mapping in GEMM

SNPstreamWildHybrids_Turner2011evolution

Genotype data, wild-caught hybrids

ReproPhenotypes_Turner2011evolution

Reproductive phenotype data. Column headings are defined in "Materials and Methods.

SNPchip5cMlabBredMales_Turner2011evolution

Genotype data for lab-bred hybrid males. 1 marker/ ~5 cM, from Mouse Diversity Array

SNPdata.bed

Bed file generated in PLINK using the LD-pruned SNPs

Phenotype_CraniofacialShape

The file contains the skull and mandible shape and size data. Centroid size (CS) and principal components (PC) were standardized to have mean=0 and standard deviation =1. Data was obtained after analyzing raw landmark coordinates in MorphoJ

SNPdata.fam

Fam file generated in PLINK using all the LD-pruned SNP