Coral reef drag coefficients—surface gravity wave enhancement

Author Posting. © American Meteorological Society, 2018. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 48 (2018): 1555-1566, doi:10.1175/JPO-D-17-0231.1.A primary challenge in modeling flow over shallow coral reefs is accurately characterizing the bottom drag. Previous studies over continental shelves and sandy beaches suggest surface gravity waves should enhance the drag on the circulation over coral reefs. The influence of surface gravity waves on drag over four platform reefs in the Red Sea is examined using observations from 6-month deployments of current and pressure sensors burst sampling at 1Hz for 4–5min. Depth-average current fluctuations U0 within each burst are dominated by wave orbital velocities uw that account for 80%–90%of the burst variance and have a magnitude of order 10 cm s21, similar to the lower-frequency depth-average current Uavg. Previous studies have shown that the cross-reef bottom stress balances the pressure gradient over these reefs. A bottom stress estimate that neglects the waves (rCdaUavgjUavgj, where r is water density and Cda is a drag coefficient) balances the observed pressure gradient when uw is smaller than Uavg but underestimates the pressure gradient when uw is larger than Uavg (by a factor of 3–5 when uw 5 2Uavg), indicating the neglected waves enhance the bottom stress. In contrast, a bottom stress estimate that includes the waves [rCda(Uavg 1 U0)jUavg 1 U0j)] balances the observed pressure gradient independent of the relative size of uw and Uavg, indicating that this estimate accounts for the wave enhancement of the bottom stress. A parameterization proposed by Wright and Thompson provides a reasonable estimate of the total bottom stress (including the waves) given the burst-averaged current and the wave orbital velocity.The Red Sea field program was supported by Awards USA 00002 and KSA 00011 made by KAUST. S. Lentz was supported for the analysis by NSF Award OCE-1558343.2019-01-1

Rapid generation of upwelling at a shelf break caused by buoyancy shutdown

Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 45 (2015): 294–312, doi:10.1175/JPO-D-14-0104.1.Model analyses of an alongshelf flow over a continental shelf and slope reveal upwelling near the shelf break. A stratified, initially uniform, alongshelf flow undergoes a rapid adjustment with notable differences onshore and offshore of the shelf break. Over the shelf, a bottom boundary layer and an offshore bottom Ekman transport develop within an inertial period. Over the slope, the bottom offshore transport is reduced from the shelf’s bottom transport by two processes. First, advection of buoyancy downslope induces vertical mixing, destratifying, and thickening the bottom boundary layer. The downward-tilting isopycnals reduce the geostrophic speed near the bottom. The reduced bottom stress weakens the offshore Ekman transport, a process known as buoyancy shutdown of the Ekman transport. Second, the thickening bottom boundary layer and weakening near-bottom speeds are balanced by an upslope ageostrophic transport. The convergence in the bottom transport induces adiabatic upwelling offshore of the shelf break. For a time period after the initial adjustment, scalings are identified for the upwelling speed and the length scale over which it occurs. Numerical experiments are used to test the scalings for a range of initial speeds and stratifications. Upwelling occurs within an inertial period, reaching values of up to 10 m day−1 within 2 to 7 km offshore of the shelf break. Upwelling drives an interior secondary circulation that accelerates the alongshelf flow over the slope, forming a shelfbreak jet. The model results are compared with upwelling estimates from other models and observations near the Middle Atlantic Bight shelf break.J. Benthuysen acknowledges support from the ARC Centre of Excellence for Climate System Science (CE110001028) and the MIT/WHOI Joint Program, where this work was initiated.2015-07-0

Shelf MIxed Layer Experiment (SMILE) program description and coastal and moored array data report

The Shelf MIxed Layer Experiment (SMILE) was designed to study the response of the oceanic surface boundary layer over the continental shelf to atmospheric forcing. The SMILE field program was conducted over the northern California shelf between Pt. Arena and Pt. Reyes from mid-November 1988 to mid-May 1989. The field program consisted of five main components: (a) a long-term moored array to obtain current, temperature, and conductivity time series observations in the upper ocean over the shelf; (b) a short-term moored instrument deployment to measure the vertical current shear and stratification in the top 6 m of the water column; (c) shipboard CTD and acoustic Doppler current profiler (ADCP) surveys over the shelf and adjacent slope to map regional water property and current distributions; (d) a long-term moored and coastal meteorological array including one sounding station to obtain time series observations of the atmospheric surface forcing and monitor the structure of the marine boundary layer; and (e) overflights with an instrumented aircraft to measure the spatial structure of the surface wind, wind stress, and heat flux fields under different atmospheric conditions. This report has two objectives: (a) to describe the SMILE field program, including overviews of the five components, and (b) to present a statistical and graphical summary of the atmospheric (wind, air temperature, pressure, relative humidity, short- and longwave radiation) and oceanic (current, water temperature, and conductivity) long-term array measurements made as part of SMILE. A more detailed description of the instrumentation used in SMILE and an assessment of instrument performance and accuracy are presented separately by Dean et al. (1991).Funding was provided by the National Science Foundation through Grant No. OCE-87-16937

Surface gravity wave transformation across a platform coral reef in the Red Sea

Author Posting. © American Geophysical Union, 2016. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Oceans 121 (2016); 693–705, doi:10.1002/2015JC011142.The transformation of surface gravity waves across a platform reef in the Red Sea is examined using 18 months of observations and a wave transformation model developed for beaches. The platform reef is 200 m across, 700 m long, and the water depth varies from 0.3 to 1.2 m. Assuming changes in wave energy flux are due to wave breaking and bottom drag dissipation, the wave transformation model with optimal parameters characterizing the wave breaking (γm = 0.25) and bottom drag (hydrodynamic roughness zo = 0.08 m) accounts for 75%–90% of the observed wave-height variance at four sites. The observations and model indicate that wave breaking dominates the dissipation in a 20–30 m wide surf zone while bottom drag dominates the dissipation over the rest of the reef. Friction factors (drag coefficients) estimated from the observed wave energy balance range from fw = 0.5 to fw = 5 and increase as wave-orbital displacements decrease. The observed dependence on wave-orbital displacement is roughly consistent with extrapolation of an empirical relationship based on numerous laboratory studies of oscillatory flow. As a consequence of the dependence on wave-orbital displacement, wave friction factors vary temporally due to changes in water depth and incident wave heights, and spatially across the reef as the waves decay.USA Grant Number: 00002; KSA Grant Number: 00011; King Abdullah University of Science and Technology (KAUST); NSF Grant Numbers: OCE-1435665, OCE-1332646 and OCE-13572902016-07-2

Toward Five-dimensional Core-collapse Supernova Simulations

The computational difficulty of six-dimensional neutrino radiation hydrodynamics has spawned a variety of approximations, provoking a long history of uncertainty in the core-collapse supernova explosion mechanism. Under the auspices of the Terascale Supernova Initiative, we are honoring the physical complexity of supernovae by meeting the computational challenge head-on, undertaking the development of a new adaptive mesh refinement code for self-gravitating, six-dimensional neutrino radiation magnetohydrodynamics. This code--called {\em GenASiS,} for {\em Gen}eral {\em A}strophysical {\em Si}mulation {\em S}ystem--is designed for modularity and extensibility of the physics. Presently in use or under development are capabilities for Newtonian self-gravity, Newtonian and special relativistic magnetohydrodynamics (with `realistic' equation of state), and special relativistic energy- and angle-dependent neutrino transport--including full treatment of the energy and angle dependence of scattering and pair interactions.Comment: 5 pages. Proceedings of SciDAC 2005, Scientific Discovery through Advanced Computing, San Francisco, CA, 26-30 June 200

Observations of fresh, anticyclonic eddies in the Hudson Strait outflow

Author Posting. © The Author(s), 2010. This is the author's version of the work. It is posted here by permission of Elsevier B.V. for personal use, not for redistribution. The definitive version was published in Journal of Marine Systems 88 (2011): 375-384, doi:10.1016/j.jmarsys.2010.12.004.The waters that flow out through Hudson Strait, a coastal system that connects Hudson Bay with the Labrador Sea, constitute the third largest freshwater contribution to the northern North Atlantic. Recent studies have documented the mean structure and transport of the outflow, as well as highlighting significant variability on synoptic scales (days–week). This study examines the outflow’s variability on these synoptic scales through the use of observations collected by a mooring array from 2005-2006. We focus on the mechanisms that cause the freshwater export to be concentrated in a series of discrete pulses during the fall/winter season. We find that the pulses occur once every 4.4 days on average and are associated with anticyclonic, surface-trapped eddies propagated through the strait by the mean outflow. Their occurrence is related to the passage of storms across Hudson Bay, although local instability processes also play a role in their formation. The eddies are responsible for approximately 40% of the mean volume transport and 50% of the mean freshwater transport out of the strait. We discuss the implications of this freshwater release mechanism on the delivery of nutrient-rich and highly stratified waters to the Labrador shelf, a productive region south of Hudson Strait.This work was funded by National Science Foundation grant OCE-0751554, with additional funding from the Office of Naval Research grant N00014-08-10490