Etude des variants génétiques des déficits immuns primaires et des formes ethniques dans l’architecture génétique des maladies inflammatoires du tube digestif

La majeure partie de l'héritabilité des maladies inflammatoires des intestins (MICI) comprenant essentiellement la maladie de Crohn (MC) et la rectocolite ulcéro-hémorragique (RCUH) reste manquante. A côté des formes classiques de MICI polygéniques, un nombre croissant de maladies rares monogéniques avec un syndrome d’immunodéficience primaire innée ou acquise (ou Primary Immune Deficiency (PID) disorders) et un tableau clinique de maladie inflammatoire gastro-intestinale semblable aux MICI ont été identifiées au cours de ces dernières années. Les gènes mutés au sein de ces PID pourraient contenir des variants rares associés aux MICI dont l'identification aurait échappé aux études d'association du génome (GWAS) et qui pourraient être détectés avec le séquençage à haut débit. Nous avons sélectionné 23 gènes candidats associés à dix maladies monogéniques avec manifestations gastro-intestinales inflammatoires ressemblant aux MICI et avons évalué la contribution éventuelle de ces gènes à la prédisposition héréditaire à développer une MC via d'une part une étude d'association sur base des données de génotypage de 17000 patients atteints de MC issus des GWAS de l'IIBDGC et d'autre part, via une étude de séquençage à haut débit au sein d'une cohorte de 2390 patients atteints de MC. Nous avons identifié 4 nouveaux variants du gène XIAP qui sont associés chez les patients porteurs de la mutation, à un défaut d'activation de la voie de NOD2 après stimulation par le muramyl dipeptide (MDP). En complément à l'étude des formes monogéniques de MICI, les formes non européennes peuvent également constituer une source de données à exploiter pour pallier à l'héritabilité manquante. En effet, la plupart des GWAS ont été effectuées au sein de populations d'origine européenne. Or en combinant plusieurs groupes ethniques, il est possible d'identifier de nouveaux loci de susceptibilité tel qu'on a pu l'observer dans la première étude trans-éthnique réalisée au sein de patients atteints de MICI. Très peu d'études génétiques ont été réalisées au sein de la population d'origine marocaine qui est la population non européenne la plus prépondérante en Belgique. Nous avons entrepris une étude d'association sur des puces de génotypage de type Immunochip au sein d'une population de 306 patients d'origine marocaine atteints de MICI, se focalisant sur les 163 variants communs de susceptibilité connus dans les MICI lorsque l'étude a été débutée. L'étude a identifié une association significative aux MICI pour dix loci notamment au sein des gènes tels que IL23R, JAK2, CARD9 ou CCR6. Ces associations sont nouvelles et n'ont pas été étudiées ou confirmées dans les précédentes études faites au sein de patients d'origine marocaine atteints de MICI.Doctorat en Sciences médicales (Médecine)info:eu-repo/semantics/nonPublishe

High-density mapping of the MHC identifies a shared role for HLA-DRB1∗01:03 in inflammatory bowel diseases and heterozygous advantage in ulcerative colitis

Genome-wide association studies of the related chronic inflammatory bowel diseases (IBD) known as Crohn's disease and ulcerative colitis have shown strong evidence of association to the major histocompatibility complex (MHC). This region encodes a large number of immunological candidates, including the antigen-presenting classical human leukocyte antigen (HLA) molecules. Studies in IBD have indicated that multiple independent associations exist at HLA and non-HLA genes, but they have lacked the statistical power to define the architecture of association and causal alleles. To address this, we performed high-density SNP typing of the MHC in >32,000 individuals with IBD, implicating multiple HLA alleles, with a primary role for HLA-DRB1∗01:03 in both Crohn's disease and ulcerative colitis. Noteworthy differences were observed between these diseases, including a predominant role for class II HLA variants and heterozygous advantage observed in ulcerative colitis, suggesting an important role of the adaptive immune response in the colonic environment in the pathogenesis of IBD.0SCOPUS: ar.jinfo:eu-repo/semantics/publishe

Effect of the intake of resveratrol, resveratrol phosphate, and catechin-rich grape seed extract on markers of oxidative stress and gene expression in adult obese subjects

Background: The preventive effect of resveratrol (RES) on the development of human diseases has been verified by numerous epidemiological studies. Resveratrol triphosphate (RTP) is a stable derivative of RES in which phosphate groups protect the phenolic groups. Aims: This study compared the effect of RTP on biochemical and molecular markers of oxidative stress to equimolar doses (0.66 mmol) of RES and catechin-rich grape seed extract (CGSE) in a model of oxidative and metabolic stress associated with obesity in humans. Methods: Thirty-two obese subjects (BMI between 30 and 40) were enrolled. They all received 1 capsule of placebo/day for 28 days before being randomly devised into three arms receiving 1 capsule/day of RES, CGSE, or RTP during the following consecutive 28 days. Blood samples were collected at baseline, after the end of placebo intake, and after the end of the investigational product intake. Biochemical parameters of oxidative stress and blood expression of 200 redox-related genes were determined at each time point. Results: RTP and CGSE showed better antioxidant activities compared to RES and induced important modulations of gene expression. Conclusion: The results suggest that RTP and CGSE could contribute to a significant reduction of oxidative stress in obese subjects. © 2012 S. Karger AG, Basel.SCOPUS: ar.jinfo:eu-repo/semantics/publishe

Predictive models assessing the response to ustekinumab highlight the value of therapeutic drug monitoring in Crohn's disease

Background: Despite the therapeutic efficacy of Ustekinumab (UST) in Crohn's disease (CD), loss of response (LOR) is observed over time. This study aims to evaluate the impact of the UST pharmacokinetics (PK) at induction on clinical and endoscopic outcomes, as well as to find predictive markers of UST response. Methods: This retrospective study included 80 CD patients. Pharmacokinetics data (trough levels (TLs)) combined with clinical and biological parameters were fed into tailored logistic regression and tree-based ensemble techniques to predict clinical and endoscopic outcomes at one year of follow-up. Results: TLs at week 16 were significantly lower among patients with moderate to severe endoscopic activity during the follow-up (p = 0.04). The best model to predict endoscopic outcome was obtained at week 16 by Random Forest with an area under the receiver operating characteristic curve of 0.92 ± 0.08, sensitivity 91% and specificity 75%, with key inputs such as lymphocyte and monocyte counts at week 8, and UST TLs and CRP at week 16. Conclusions: This real-world study confirms the relationship between early UST TLs and both clinical and endoscopic outcomes. Models were developed for the task of predicting clinical and endoscopic remission in CD patients treated with UST, highlighting the clinical relevance of UST TLs at week 16.SCOPUS: ar.jinfo:eu-repo/semantics/publishe

Clinical and scientific aspects related to biosimilars in Inflammatory Bowel Diseases (IBD): Position document of the Belgian IBD Research & Development Group (BIRD)

0SCOPUS: no.jinfo:eu-repo/semantics/publishe

Infliximab Trough Levels at Induction to Predict Treatment Failure during Maintenance

Background: Infliximab (IFX) is indicated for the treatment of inflammatory bowel diseases (IBD). Nevertheless, loss of response (LOR) to IFX is reported in up to 10% to 30% of patients within the first year of treatment. Our objective was to evaluate the impact of the pharmacokinetics of IFX at induction on treatment failure. Methods: This is a longitudinal cohort study on 269 patients with IBD treated with IFX in a single center. A total of 2331 blood samples were prospectively collected from 2007 until March 2015 with a retrospective analysis of clinical data. IFX trough levels (TLs) were measured by enzyme-linked immunosorbent assay. Antibodies to IFX were measured by drug-sensitive bridging assay. Results: During follow-up, patients were defined according to treatment outcome. At week 6, median IFX TL in patients requiring a switch to another treatment due to LOR (LOR switched group) (2.32 μg/mL [0.12-19.93 μg/mL]) was lower than in patients with long-term response (long-term responders) (8.66 μg/mL [0.12-12.09 μg/mL], P = 0.007) and in patients responding to optimization (LOR optimized group) (7.28 μg/mL [0.17-14.91 μg/mL], P = 0.021). At week 2, median IFX TL was lower in the LOR switched group (5.7 μg/mL [0.15-12.09 μg/mL]) compared with the long-term responders (11.92 μg/mL [0.14-19.93 μg/mL], P = 0.041) but no significant difference was reached with the LOR optimized group (11.91 μg/mL [0.23-12.09 μg/mL], P = 0.065). In the LOR switched group, median IFX TL at induction (weeks 2 and 6) was significantly lower when patients had been previously exposed to anti-tumor necrosis factor compared with naive patients (0.91 μg/mL [0.12-4.4 μg/mL] versus 6.6 μg/mL [0.15-19.93 μg/mL], P = 0.044). Conclusions: This study suggests that patients who do not respond to any optimization strategy have lower IFX TLs during induction at week 6. IFX TLs measured early on at induction might predict treatment failure to IFX during maintenance.SCOPUS: ar.jinfo:eu-repo/semantics/publishe

Early vedolizumab trough levels at induction in inflammatory bowel disease patients with treatment failure during maintenance.

Vedolizumab (VDZ) is effective as an induction and maintenance treatment for Crohn's disease and ulcerative colitis, but, as observed with antitumour necrosis factor-α (anti-TNFα) agents, some patients are nonetheless experiencing loss of response.SCOPUS: ar.jinfo:eu-repo/semantics/publishe

Variability of faecal calprotectin in inflammatory bowel disease patients: An observational case-control study

Background and Aims: Several factors have been reported to affect faecal calprotectin [FC] values, and significant variation in FC concentrations has been observed in inflammatory bowel disease [IBD] patients. We aimed to evaluate FC variability in IBD patients, and to assess the robustness of a single stool punch. Methods: This is a single-centre observational case-control study. Disease activity was assessed using endoscopic and clinical activity scores, as well as C-reactive protein levels. Stool samples were collected twice within a 1 to 6 days interval, and FC was measured on punches and homogenates by fluorometric enzyme immunocapture assay. Results: In all, 260 stool samples were collected from 120 patients. Intrastool variability was low, with an intraclass correlation coefficient for single measures between three punches from a single stool sample of 0.91, and median coefficient of variation [CV] of 17%. CV of two stool samples a few days apart [intra-individual variability] were significantly higher [p <0.01] with median CV of 36%. FC standard deviations correlated with mean FC levels either for intrastool or for intra-individual variability, with a Spearman's coefficient of rank correlation of 0.85 and 0.78, respectively [p <0.01]. Disease type, location, activity, and FC levels did not influence variability. Conclusions: A single stool punch is reliable for FC measurement, considering that intrastool variability is low. Intra-individual variability a few days apart is significantly higher. Therefore, decision-making strategies based on single measurements should consider this variability, to determine the minimum optimal variation to be achieved, rather than a cut-off, especially in high FC levels.SCOPUS: ar.jinfo:eu-repo/semantics/publishe