Radial distribution of RNA genome packaged inside spherical viruses

The problem of RNA genomes packaged inside spherical viruses is studied. The viral capsid is modeled as a hollowed sphere. The attraction between RNA molecules and the inner viral capsid is assumed to be non-specific and occurs at the inner capsid surface only. For small capsid attraction, it is found that monomer concentration of RNA molecules is maximum at the center of the capsid to maximize their configurational entropy. For stronger capsid attraction, RNA concentration peaks at some distance near the capsid. In the latter case, the competition between the branching of RNA secondary struture and its adsorption to the inner capsid results in the formation of a dense layer of RNA near capsid surface. The layer thickness is a slowly varying (logarithmic) function of the capsid inner radius. Consequently, for immediate strength of RNA-capsid interaction, the amount of RNA packaged inside a virus is proportional to the capsid {\em area} (or the number of proteins) instead of its volume. The numerical profiles describe reasonably well the experimentally observed RNA nucleotide concentration profiles of various viruses.Comment: 5 pages, 2 figures. Abstract, introduction rewritten. Comparison to actual virus profiles added. Submitted to PR

F-wave versus P-wave Superconductivity in Organic Conductors

Current experimental results suggest that some organic quasi-one-dimensional superconductors exhibit triplet pairing symmetry. Thus, we discuss several potential triplet order parameters for the superconducting state of these systems within the functional integral formulation. We compare weak spin-orbit coupling $f_{xyz}$, $p_x$, $p_y$ and $p_z$ symmetries via several thermodynamic quantities. For each symmetry, we analyse the temperature dependences of the order parameter, condensation energy, specific heat, and superfluid density tensor.Comment: 5 pages, 4 figure

Exact Partition Function Zeros of a Polymer on a Simple-Cubic Lattice

We study conformational transitions of a polymer on a simple-cubic lattice by calculating the zeros of the exact partition function, up to chain length 24. In the complex temperature plane, two loci of the partition function zeros are found for longer chains, suggesting the existence of both the coil-globule collapse transition and the melting-freezing transition. The locus corresponding to coil-globule transition clearly approaches the real axis as the chain length increases, and the transition temperature could be estimated by finite-size scaling. The form of the logarithmic correction to the scaling of the partition function zeros could also be obtained. The other locus does not show clear scaling behavior, but a supplementary analysis of the specific heat reveals a first-order-like pseudo-transition.Comment: 21 pages, 4 figure

Study of the Fully Frustrated Clock Model using the Wang-Landau Algorithm

Monte Carlo simulations using the newly proposed Wang-Landau algorithm together with the broad histogram relation are performed to study the antiferromagnetic six-state clock model on the triangular lattice, which is fully frustrated. We confirm the existence of the magnetic ordering belonging to the Kosterlitz-Thouless (KT) type phase transition followed by the chiral ordering which occurs at slightly higher temperature. We also observe the lower temperature phase transition of KT type due to the discrete symmetry of the clock model. By using finite-size scaling analysis, the higher KT temperature $T_2$ and the chiral critical temperature $T_c$ are respectively estimated as $T_2=0.5154(8)$ and $T_c=0.5194(4)$. The results are in favor of the double transition scenario. The lower KT temperature is estimated as $T_1=0.496(2)$. Two decay exponents of KT transitions corresponding to higher and lower temperatures are respectively estimated as $\eta_2=0.25(1)$ and $\eta_1=0.13(1)$, which suggests that the exponents associated with the KT transitions are universal even for the frustrated model.Comment: 7 pages including 9 eps figures, RevTeX, to appear in J. Phys.

More on Membranes in Matrix Theory

We study noncompact and static membrane solutions in Matrix theory. Demanding axial symmetry on a membrane embedded in three spatial dimensions, we obtain a wormhole solution whose shape is the same with the catenoidal solution of Born-Infeld theory. We also discuss another interesting class of solutions, membranes embedded holomorphically in four spatial dimensions, which are 1/4 BPS.Comment: 7 pages, LaTeX; expanded to treat matrix membrane solutions with electric flux, equivalently fundamental strings; to appear in Phys. Rev.