28 research outputs found
Multi-Solution Genetic Algorithm Approach to Surface Structure Determination Using Direct Methods
Atomic-scale structure of the SrTiO3(001)-c(6x2) reconstruction: Experiments and first-principles calculations
The c(6x2) is a reconstruction of the SrTiO3(001) surface that is formed
between 1050-1100oC in oxidizing annealing conditions. This work proposes a
model for the atomic structure for the c(6x2) obtained through a combination of
results from transmission electron diffraction, surface x-ray diffraction,
direct methods analysis, computational combinational screening, and density
functional theory. As it is formed at high temperatures, the surface is complex
and can be described as a short-range ordered phase featuring microscopic
domains composed of four main structural motifs. Additionally, non-periodic
TiO2 units are present on the surface. Simulated scanning tunneling microscopy
images based on the electronic structure calculations are consistent with
experimental images
In situ proteome profiling of C75, a covalent bioactive compound with potential anticancer activities
10.1021/ol500206wOrganic Letters1651414-1417ORLE
Functional Organization of Single and Paired V(D)J Cleavage Complexes
RAG-1 and RAG-2 initiate V(D)J recombination by binding to specific recognition sequences (RSS) and then cleave the DNA in two steps: nicking and hairpin formation. Recent work has established that a dimer of RAG-1 and either one or two monomers of RAG-2 bind to a single RSS, but the enzymatic contributions of the RAG molecules within this nucleoprotein complex and its functional organization have not been elucidated. Using heterodimeric protein preparations containing both wild-type and catalytically deficient RAG-1 molecules, we found that one active monomer is sufficient for both nicking and hairpin formation at a single RSS, demonstrating that a single active site can carry out both cleavage steps. Furthermore, the mutant heterodimers efficiently cleaved both RSS in a synaptic complex. These results strongly suggest that two RAG-1 dimers are responsible for RSS cleavage in a synaptic complex, with one monomer of each dimer catalyzing both nicking and hairpin formation at each RSS