4,247 research outputs found

    Energy from waste: reuse of compost heat as a source of renewable energy

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    An in-vessel tunnel composting facility in Scotland was used to investigate the potential for collection and reuse of compost heat as a source of renewable energy. The amount of energy offered by the compost was calculated and seasonal variations analysed. A heat exchanger was designed in order to collect and transfer the heat. This allowed heated water of 47.3oC to be obtained. The temperature could be further increased to above 60oC by passing it through multiple tunnels in series. Estimated costs for installing and running the system were calculated. In order to analyse these costs alternative solar thermal and ground source heat pump systems were also designed. The levels of supply and economic performance were then compared. A capital cost of £11,662 and operating cost of £1,039 per year were estimated, resulting in a cost of £0.50 per kWh for domestic water and £0.10 per kWh for spatial heat. Using the heat of the compost was found to provide the most reliable level of supply at a similar price to its rivals

    Protection of LEP Experiments against Particle Background at Highest Beam Energies

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    The protection system used to shield LEP experiments against particle backgrounds has been upgraded in view of the much higher photon background rates expected at LEP2 energies. General experience with background rates in the LEP experiments at highest beam energies is reported and special features are highlighted

    Label-free proteomics identifies Calreticulin and GRP75/Mortalin as peripherally accessible protein biomarkers for spinal muscular atrophy

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    BACKGROUND: Spinal muscular atrophy (SMA) is a neuromuscular disease resulting from mutations in the survival motor neuron 1 (SMN1) gene. Recent breakthroughs in preclinical research have highlighted several potential novel therapies for SMA, increasing the need for robust and sensitive clinical trial platforms for evaluating their effectiveness in human patient cohorts. Given that most clinical trials for SMA are likely to involve young children, there is a need for validated molecular biomarkers to assist with monitoring disease progression and establishing the effectiveness of therapies being tested. Proteomics technologies have recently been highlighted as a potentially powerful tool for such biomarker discovery. METHODS: We utilized label-free proteomics to identify individual proteins in pathologically-affected skeletal muscle from SMA mice that report directly on disease status. Quantitative fluorescent western blotting was then used to assess whether protein biomarkers were robustly changed in muscle, skin and blood from another mouse model of SMA, as well as in a small cohort of human SMA patient muscle biopsies. RESULTS: By comparing the protein composition of skeletal muscle in SMA mice at a pre-symptomatic time-point with the muscle proteome at a late-symptomatic time-point we identified increased expression of both Calreticulin and GRP75/Mortalin as robust indicators of disease progression in SMA mice. We report that these protein biomarkers were consistently modified in different mouse models of SMA, as well as across multiple skeletal muscles, and were also measurable in skin biopsies. Furthermore, Calreticulin and GRP75/Mortalin were measurable in muscle biopsy samples from human SMA patients. CONCLUSIONS: We conclude that label-free proteomics technology provides a powerful platform for biomarker identification in SMA, revealing Calreticulin and GRP75/Mortalin as peripherally accessible protein biomarkers capable of reporting on disease progression in samples of muscle and skin

    Sea turtle nesting activity along Eglin Air Force Base on Cape San Blas and Santa Rosa Island, Florida from 1994 to 1997.

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    Along EAFB on Cape San BIas, the only sea turtle species nest observed has been the loggerhead turtle. The first green turtle nest documented along the Florida panhandle coast was observed on EAFB property, however (D. Atencio, EAFB, pers. comm). Santa Rosa Island, located approximately 150 miles west of Cape San BIas supports a small but consistent, group of nesting green turtles (Fig. 2). Although erosion is not as severe along Santa Rosa Island as it is on Cape San BIas, and vehicular traffic is not permitted, sea turtles nesting on this barrier island must survive severe tropical storms, predation, and artificial lighting to be successful. Because this area supports a rare group of nesting green turtles and is disturbed by intense artificial lighting from Air Force missions and adjacent resort towns, continued monitoring is necessary. The sea turtle species that nest along this barrier island, and the human activities that disturb those sea turtles present unique circumstances for management ofthis area. Protection ofthe significant nesting populations of sea turtles on EAFB properties on Cape San BIas and Santa Rosa Island requires yearly monitoring of the nesting activity and the natural and human disturbances influencing the nesting females. The objectives ofthis study were to monitor sea turtle nesting along EAFB on Cape San BIas to determine number of nests and hatching success, assess disturbances, and determine proper management to ensure successful nesting and hatching.(56 page document

    The Effect of Heritability Estimates on High-Density Single Nucleotide Polymorphism Analyses with Related Animals

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    Analysis of high-density SNP data in outbred populations to identify SNP that are associated with a quantitative trait requires efficient ways to handle large volumes of data and analyses. When using mixed animal models to account for polygenic effects and relationships, genetic parameters are not known with certainty, but must be chosen to ensure proper evaluation of SNP across chromosomes and lines or breeds. The objectives of this study were to evaluate the influence of heritability on the estimates and significance of SNP effects, to develop efficient computational strategies for analysis of high-density SNP data with uncertain heritability estimates, and to develop strategies to combine SNP test results across lines or breeds. Data included sire SNP genotypes and mean progeny performance from 2 commercial broiler breeding lines. Association analyses were done by fitting each SNP separately as a fixed effect in an animal model, using a range of heritabilities. The heritability used had a limited impact on SNP effect estimates, but affected the SE of estimates and levels of significance. The shape of the frequency distribution of P-values for the test of SNP effects changed from a highly skewed L-shaped curve at low heritability to a right-skewed distribution at high heritability. The P-values for alternative heritabilities could, however, be derived without reanalysis based on a strong linear relationship (R2 = 0.99) between differences in log-likelihood values of models with and without the SNP at different levels of heritabilities. With uncertain estimates of heritability, line-specific heritabilities that ensure proper evaluation of SNP effects across lines were determined by analysis of simulated sire genotypes and by permutation tests. Resulting heritability estimates were between those obtained from the entire breeding populations and those obtained from the data included in the sample data set. In conclusion, the uncertainty of heritability estimates has a limited impact on SNP effect estimates in association analyses, but a large impact on significance tests. The impact of heritability on tests can, however, be dealt with in a computationally efficient manner by using the strong linear relationship between model statistics under alternate levels of heritability. These approaches allow efficient analysis of large numbers of SNP for multiple traits and populations and pooling of results across populations

    The Cape San Blas Ecological Study

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    Eglin AFB on Cape San Blas consists of approximately 250 acres located about 180 miles east of the main Eglin reservation. This area lies on the S1. Joseph peninsula, part of a dynamic barrier island chain that extends across the northern Gulf of Mexico. Due to the natural forces that formed Cape San Blas and those that maintain this area, St. Joseph Peninsula has experienced severe land form change over time (see GIS land form change maps). These changes allow for fluctuations in habitat types along Cape San Blas (see GIS land cover change maps)that influence the floral and faunal species using this area. The dynamic environment along Cape San Blasincludes flatwoods, interdunal swale, rosemary scrub, and beachfront. These habitats support a wide array of species, including several threatened and endangered species such as the loggerhead sea turtle (Caretta caretta), PipingPlover (Charadnus melodus), Least Tern (Sterna antillarum), and Bald Eagle (Haliaeetus leucocephalus). Proper management of these species and their habitats require knowledge of their abundance and distribution, and the effects disturbances have on their survival. In addition to threatened and endangered flora and fauna, Cape San Blas also supports tourists and recreationists. Although Gulf County is sparsely populated, with approximately 13,000 inhabitants throughout 578 square miles, summer tourism and heavy recreational use of beaches for fishing, crabbing, and shelling place continued and increasing pressure on the natural resources of these areas (Rupert 1991). Gulf County is also one of the few remaining counties in Florida that permits vehicular traffic on its beaches, including Cape San Blas. In addition to recreational use of these habitats;EAFB also uses the area for military missions. Air Force property on Cape San Blas is primarily used for radar tracking of flying missions over the Gulf of Mexico, although in recent years it has been used for missile launchings and other various military activities. To allow continued military and public use of Air Force property while also protecting the unique flora and fauna of the area,EAFB proposed a characterization of the resources found along Cape San Blas. A complete inventory of the physical features of the area included investigating topography, soil chemistry, hydrology, archeology, and the dynamics of land mass and land cover change over time. Various thematic layers within a geographic information system (GIS) were used to spatially portray georeferenced data. Large scale changes over time were assessed using stereo aerial photography. Vegetation transects, soil samples, elevation transects, an archeological survey, freshwater wells, and a tidal monitor were used to investigate the remaining features. (247 page document

    Baseline LHC machine parameters and configuration of the 2015 proton run

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    This paper shows the baseline LHC machine parameters for the 2015 start-up. Many systems have been upgraded during LS1 and in 2015 the LHC will operate at a higher energy than before and with a tighter filling scheme. Therefore, the 2015 commissioning phase risks to be less smooth than in 2012. The proposed starting configuration puts the focus on feasibility rather than peak performance and includes margins for operational uncertainties. Instead, once beam experience and a better machine knowledge has been obtained, a push in β\beta^* and performance can be envisaged. In this paper, the focus is on collimation settings and reach in β\beta^*---other parameters are covered in greater depth by other papers in these proceedings.Comment: submitted for publication in a CERN yellow report (Proceedings of the LHC Performance Workshop - Chamonix 2014

    Quantitative proteomics in resected renal cancer tissue for biomarker discovery and profiling

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    <b>Background:</b>  Proteomics-based approaches for biomarker discovery are promising strategies used in cancer research. We present state-of-art label-free quantitative proteomics method to assess proteome of renal cell carcinoma (RCC) compared with noncancer renal tissues.<p></p> <b>Methods:</b>  Fresh frozen tissue samples from eight primary RCC lesions and autologous adjacent normal renal tissues were obtained from surgically resected tumour-bearing kidneys. Proteins were extracted by complete solubilisation of tissues using filter-aided sample preparation (FASP) method. Trypsin digested proteins were analysed using quantitative label-free proteomics approach followed by data interpretation and pathways analysis.<p></p> <b>Results:</b>  A total of 1761 proteins were identified and quantified with high confidence (MASCOT ion score threshold of 35 and P-value <0.05). Of these, 596 proteins were identified as differentially expressed between cancer and noncancer tissues. Two upregulated proteins in tumour samples (adipose differentiation-related protein and Coronin 1A) were further validated by immunohistochemistry. Pathway analysis using IPA, KOBAS 2.0, DAVID functional annotation and FLink tools showed enrichment of many cancer-related biological processes and pathways such as oxidative phosphorylation, glycolysis and amino acid synthetic pathways.<p></p> <b>Conclusions:<b>  Our study identified a number of differentially expressed proteins and pathways using label-free proteomics approach in RCC compared with normal tissue samples. Two proteins validated in this study are the focus of on-going research in a large cohort of patients.<p></p&gt

    Small-seeded Hakea species tolerate cotyledon loss better than large-seeded congeners.

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    Six Hakea species varying greatly in seed size were selected for cotyledon damage experiments. The growth of seedlings with cotyledons partially or completely removed was monitored over 90 days. All seedlings perished by the fifth week when both cotyledons were removed irrespective of seed size. Partial removal of cotyledons caused a significant delay in the emergence of the first leaf, and reduction in root and shoot growth of the large-seeded species. The growth of seedlings of small-seeded species was less impacted by cotyledon damage. The rate of survival, root and shoot lengths and dry biomass of the seedlings were determined after 90 days. When seedlings were treated with balanced nutrient solutions following removal of the cotyledons, survival was 95-98%, but 0% when supplied with nutrient solutions lacking N or P or with water only. The addition of a balanced nutrient solution failed to restore complete growth of any species, but the rate of root elongation for the small-seeded species was maintained. Cotyledons provide nutrients to support early growth of Hakea seedlings, but other physiological roles for the cotyledons are also implicated. In conclusion, small-seeded Hakea species can tolerate cotyledons loss better than large-seeded species
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