Do Abstinence-Plus Interventions Reduce Sexual Risk Behavior among Youth?

The authors discuss the policy questions arising from a new study on "abstinence-plus" interventions for reducing HIV risk behavior among youth in high-income countries

A finite-difference scheme for three-dimensional incompressible flows in spherical coordinates

In this study we have developed a flexible and efficient numerical scheme for the simulation of three-dimensional incompressible flows in spherical coordinates. The main idea, inspired by a similar strategy as (Verzicco, R., Orlandi, P., 1996, A Finite-Difference Scheme for Three-Dimensional Incompressible Flows in Cylindrical Coordinates) for cylindrical coordinates, consists of a change of variables combined with a discretization on a staggered mesh and the special treatment of few discrete terms that remove the singularities of the Navier-Stokes equations at the sphere centre and along the polar axis. This new method alleviates also the time step restrictions introduced by the discretization around the polar axis while the sphere centre still yields strong limitations, although only in very unfavourable flow configurations. The scheme is second-order accurate in space and is verified and validated by computing numerical examples that are compared with similar results produced by other codes or available from the literature. The method can cope with flows evolving in the whole sphere, in a spherical shell and in a sector without any change and, thanks to the flexibility of finite-differences, it can employ generic mesh stretching (in two of the three directions) and complex boundary conditions

Procjena prošlih promjena u okolišu proučavanjem sedimenata u hiperslanoj laguni

Carbon and oxygen isotopes, organic matter elemental composition, and mineralogy of carbonates were used as proxies to investigate environmental changes recorded in the carbonate-rich sediment of the hypersaline lagoon "Vermelha", Rio de Janeiro. Isotopic and other data suggest that two striking shifts in environmental conditions occurred about 1900 and 3200 years ago. Carbonates δ(18O) and δ(13C) were found in the range of +1.5‰ to +4.5 ‰ (PDB), and –2 ‰ to –11‰ (PDB), respectively. In organic matter, δ(13C) ranged from –22 ‰ to –15 ‰ (PDB). Calcites and dolomites are present in the studied core; their relative abundance seems to be related to the observed changes. Calcites are enriched up 38 % in MgCO3 (mole fraction, x). As distinct from calcites with lower magnesium contents, Mg-calcite with x(Mg) > 20 % shows an additional peak at 0.2929 nm in the X-ray diffractogram. Samples that contain Mg-calcite or 100 % dolomite show similar δ(13C) values. There are strong indications for an early formation of dolomite already in the microbial mat region. 18O and 2H determinations in lagoon water confirm evaporation as the water balance controlling processU radu je opisana uporaba izotopa ugljika i kisika, elementnog sastava organske tvari i mineralogije karbonata kao faktora u istraživanju promjena na okolišu utvrđenih u karbonatom bogatim sedimentima hiperslane lagune "Vermelha" kod Rio de Janeira u Brazilu. Izotopski i drugi podaci ukazuju na dvije značajne promjene okolišnih uvjeta, koje su se dogodile prije 1900 odnosno 3200 godina. U karbonatima, vrijednosti δ(18O) i δ(13C) izmjerene su u rasponu od +1,5 ‰ do +4,5 ‰, odnosno od –2 ‰ do –11 ‰ (standard Pee Dee Belemnite – PDB). Kod organske tvari, vrijednost δ(13C) varira u rasponu od –22 ‰ do –15 ‰ (PDB). U istraživanoj su sedimentnoj jezgri utvrđeni kalcit i dolomit, a njihova relativna zastupljenost povezana je s utvrđenim okoliš nim promjenama. Kalciti sadrže do 38 % MgCO3 (molni udjeli, x). Za razliku od kalcita s nižim sadržajem magnezija, magnezijev kalcit (x(Mg) > 20 %) pokazuje dodatnu liniju na rendgenskom difraktogramu kod 2929 nm. Uzorci koji sadrže magnezijev kalcit ili čisti dolomit pokazuju slične vrijednosti δ(13C). Postoje snažne indicije za stvaranje dolomita već u području mikrobnih pokrova. Vrijednosti 18O i 2H u vodi lagune ukazuju na to da je isparavanje proces koji kontrolira bilancu vode u sustavu

Profiling microbial communities in manganese remediation systems treating coal mine drainage

Author Posting. © American Society for Microbiology, 2015. This article is posted here by permission of American Society for Microbiology for personal use, not for redistribution. The definitive version was published in Applied and Environmental Microbiology 81 (2015): 2189-2198, doi:10.1128/AEM.03643-14.Water discharging from abandoned coal mines can contain extremely high manganese levels. Removing this metal is an ongoing challenge. Passive Mn(II) removal beds (MRBs) contain microorganisms that oxidize soluble Mn(II) to insoluble Mn(III/IV) minerals, but system performance is unpredictable. Using amplicon pyrosequencing, we profiled the bacterial, fungal, algal and archaeal communities in four variably-performing MRBs in Pennsylvania to determine whether they differed among MRBs and from surrounding soil, and to establish the relative abundance of known Mn(II)-oxidizers. Archaea were not detected; PCRs with archaeal primers returned only non-target bacterial sequences. Fungal taxonomic profiles differed starkly between sites that remove the majority of influent Mn and those that do not, with the former dominated by Ascomycota (mostly Dothideomycetes) and the latter by Basidiomycota (almost entirely Agaricomycetes). Taxonomic profiles for the other groups did not differ significantly between MRBs, but OTU-based analyses showed significant clustering by MRB with all four groups (p<0.05). Soil samples clustered separately from MRBs in all groups except fungi, whose soil samples clustered loosely with their respective MRB. Known Mn(II) oxidizers accounted for a minor proportion of bacterial sequences (up to 0.20%) but a greater proportion of fungal sequences (up to 14.78%). MRB communities are more diverse than previously thought, and more organisms may be capable of Mn(II) oxidation than are currently known.This project was funded by Smithsonian Scholarly Studies and Next-Generation Sequencing grants to C.M.S., by a Smithsonian Postdoctoral Fellowship to D.L.C., and by the National Science Foundation, grant numbers EAR-1249489 (awarded to C.M.H.) and CBET-1336496 (awarded to C.M.H. and C.M.S.)

Promotion of Mn(II) Oxidation and Remediation of Coal Mine Drainage in Passive Treatment Systems by Diverse Fungal and Bacterial Communities

Biologically active, passive treatment systems are commonly employed for removing high concentrations of dissolved Mn(II) from coal mine drainage (CMD). Studies of microbial communities contributing to Mn attenuation through the oxidation of Mn(II) to sparingly soluble Mn(III/IV) oxide minerals, however, have been sparse to date. This study reveals a diverse community of Mn(II)-oxidizing fungi and bacteria existing in several CMD treatment systems.Organismic and Evolutionary Biolog

Muscle Activated 3D Printed Prosthetic Arm

Due to the rapid growth of children and the cost of myoelectric technology, children are not given the same opportunities to use myoelectric prosthetics as adults. The Muscle Activated Prosthesis (MAP) team seeks to reconcile this by creating an affordable, trans-radial, myoelectric prosthesis that utilizes the flexibility of 3D printing technology for a fourteen-year-old congenital amputee named Lily. The MAP team has completed the design and prototype of a myoelectric prosthesis with a material cost of approximately $1,000 as opposed to the$10,000-$20,000 cost of clinically accepted myoelectric prosthetic upper limbs. The 3D printed prosthetic arm prototype incorporates electromyography (EMG) electrodes, a motor and tendon system, an open-source prosthetic hand design, a custom printed circuit board (PCB), and lithium-ion battery power. The opening and closing of the prosthetic hand is controlled by the myoelectric signals from the user’s forearm contractions which can be tested by the team using our adaptive prosthetic attachment. All these components result in an affordable prosthetic that has the potential for customization and adaptation to different sized limbs. Funding for this work provided by The Collaboratory for Strategic Partnerships and Applied Research.https://mosaic.messiah.edu/engr2022/1009/thumbnail.jp

A qualitative study of Parent to Parent support for parents of children with special needs. Consortium to evaluate Parent to Parent.

OBJECTIVE: To examine qualitatively the experiences of parents participating in Parent to Parent programs. METHOD: Twenty-four parents of children with special needs, a subset of subjects in a larger quantitative study, participated in a semi-structured telephone interview to explore the impact and meaning of being matched with a trained supporting parent. RESULTS: Qualitative analysis reveals a successful match is contingent upon creation of a reliable ally in the supporting parent, comprised of four main components: (1) perceived sameness, (2) situational comparisons that enable learning and growth, (3) round-the-clock availability of support, and (4) mutuality of support. CONCLUSIONS: Parent to Parent support creates a community of similar others trained to listen and be supportive and provides an opportunity for matched parents to experience equality and mutuality in their relationship. Findings also identify the need for quality control in Parent to Parent programs and the importance of such programs as an adjunct to traditional professional services

Isolation of a SIR-like gene, SIR-T8, that is overexpressed in thyroid carcinoma cell lines and tissues

We used subtractive library screening to identify the changes that occur in gene expression during thyroid cell neoplastic transformation. Complementary DNA from normal thyroid cells (HTC 2) was subtracted from a complementary DNA library constructed from a human thyroid papillary carcinoma cell line. The library was screened for genes upregulated in human thyroid papillary carcinoma cell line cells, and several cDNA clones were isolated. One of these clones has a sirtuin core and high homology with the human silent information regulator protein family. This clone, designated ‘SIR-T8’, was overexpressed in human thyroid carcinoma cell lines and tissues, but not in adenomas. The human SIR-T8 protein has a molecular weight of 39 kDa and is primarily located in the cytoplasm under the nuclear membrane. The SIR-T8 gene is located on chromosome 17q25-1

Religiosity and teen birth rate in the United States

<p>Abstract</p> <p>Background</p> <p>The children of teen mothers have been reported to have higher rates of several unfavorable mental health outcomes. Past research suggests several possible mechanisms for an association between religiosity and teen birth rate in communities.</p> <p>Methods</p> <p>The present study compiled publicly accessible data on birth rates, conservative religious beliefs, income, and abortion rates in the U.S., aggregated at the state level. Data on teen birth rates and abortion originated from the Center for Disease Control; on income, from the U.S. Bureau of the Census, and on religious beliefs, from the U.S. Religious Landscape Survey carried out by the Pew Forum on Religion and Public Life. We computed correlations and partial correlations.</p> <p>Results</p> <p>Increased religiosity in residents of states in the U.S. strongly predicted a higher teen birth rate, with r = 0.73 (p < 0.0005). Religiosity correlated negatively with median household income, with r = -0.66, and income correlated negatively with teen birth rate, with r = -0.63. But the correlation between religiosity and teen birth rate remained highly significant when income was controlled for via partial correlation: the partial correlation between religiosity and teen birth rate, controlling for income, was 0.53 (p < 0.0005). Abortion rate correlated negatively with religiosity, with r = -0.45, p = 0.002. However, the partial correlation between teen birth rate and religiosity remained high and significant when controlling for abortion rate (partial correlation = 0.68, p < 0.0005) and when controlling for both abortion rate and income (partial correlation = 0.54, p = 0.001).</p> <p>Conclusion</p> <p>With data aggregated at the state level, conservative religious beliefs strongly predict U.S. teen birth rates, in a relationship that does not appear to be the result of confounding by income or abortion rates. One possible explanation for this relationship is that teens in more religious communities may be less likely to use contraception.</p

Mechanisms of manganese(II) oxidation by filamentous ascomycete fungi vary with species and time as a function of secretome composition

© The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Zeiner, C. A., Purvine, S. O., Zink, E., Wu, S., Pasa-Tolic, L., Chaput, D. L., Santelli, C. M., & Hansel, C. M. Mechanisms of manganese(II) oxidation by filamentous ascomycete fungi vary with species and time as a function of secretome composition. Frontiers in Microbiology, 12, (2021): 610497, https://doi.org/10.3389/fmicb.2021.610497.Manganese (Mn) oxides are among the strongest oxidants and sorbents in the environment, and Mn(II) oxidation to Mn(III/IV) (hydr)oxides includes both abiotic and microbially-mediated processes. While white-rot Basidiomycete fungi oxidize Mn(II) using laccases and manganese peroxidases in association with lignocellulose degradation, the mechanisms by which filamentous Ascomycete fungi oxidize Mn(II) and a physiological role for Mn(II) oxidation in these organisms remain poorly understood. Here we use a combination of chemical and in-gel assays and bulk mass spectrometry to demonstrate secretome-based Mn(II) oxidation in three phylogenetically diverse Ascomycetes that is mechanistically distinct from hyphal-associated Mn(II) oxidation on solid substrates. We show that Mn(II) oxidative capacity of these fungi is dictated by species-specific secreted enzymes and varies with secretome age, and we reveal the presence of both Cu-based and FAD-based Mn(II) oxidation mechanisms in all 3 species, demonstrating mechanistic redundancy. Specifically, we identify candidate Mn(II)-oxidizing enzymes as tyrosinase and glyoxal oxidase in Stagonospora sp. SRC1lsM3a, bilirubin oxidase in Stagonospora sp. and Paraconiothyrium sporulosum AP3s5-JAC2a, and GMC oxidoreductase in all 3 species, including Pyrenochaeta sp. DS3sAY3a. The diversity of the candidate Mn(II)-oxidizing enzymes identified in this study suggests that the ability of fungal secretomes to oxidize Mn(II) may be more widespread than previously thought.This work was supported by the National Science Foundation, grant numbers EAR-1249489 and CBET-1336496, both awarded to CH, by a JGI-EMSL Collaborative Science Initiative grant (proposal number 48100) awarded to CH and CS, and by the University of St. Thomas. Personal support for CZ was also provided by Harvard University and by a Ford Foundation Predoctoral Fellowship administered by the National Academies. A portion of this research was performed under the Facilities Integrating Collaborations for User Science (FICUS) program and used resources at the DOE Joint Genome Institute and the Environmental Molecular Sciences Laboratory (grid.436923.9), which are DOE Office of Science User Facilities. Both facilities are sponsored by the Biological and Environmental Research Program and operated under Contract Nos. DE-AC02-05CH11231 (JGI) and DE-AC05-76RL01830 (EMSL). Part of this research was performed at the Bauer Core Facility of the FAS Center for Systems Biology at Harvard University. A portion of the bioinformatics analysis was performed at Harvard’s FAS Research Computing facility