Appendix A. Figure for the number of surveys per site and figures of additional predictive occupancy maps.

Figure for the number of surveys per site and figures of additional predictive occupancy maps

Spatial analysis results for the central California skate assemblage.

<p>NS = not significant. N = number, WT = weight (kilograms), %FO = frequency of occurrence among hauls, CPUE = catch-per-unit-effort (#/km², kg/km²), ISA = incremental spatial autocorrelation, K = K Function, km = kilometers. Significant p-value thresholds are indicated as follows: * = <0.05, ** = <0.001. Data were collected during National Marine Fisheries Service, Northwest Fisheries Science Center and Alaska Fisheries Science Center trawl surveys (<i>n</i> = 422) conducted during 1997–2010 on the continental shelf and upper slope of central California.</p><p>Spatial analysis results for the central California skate assemblage.</p

Trawl locations among regions in the west-central Gulf of Alaska.

<p>Alaska Department of Fish and Game trawl survey regions located within the larger study site in the western Gulf of Alaska. The total number of trawls conducted during 2003–2012 among regions was, as follows: Kodiak Island (<i>n</i> = 1836), Shelikof Strait (<i>n</i> = 278), Alaska Peninsula (<i>n</i> = 1368), and Kamishak Bay (<i>n</i> = 160).</p

Hot and cold spot maps for <i>Raja inornata, R. stellulata, and Bathyraja kincaidii</i>.

<p>Getis-GI Hot Spot Analysis Z-score plots of catch-per-unit-effort (kg/km) for the California skate, <i>Raja inornata</i> (A); starry skate, <i>R. stellulata</i> (B), and sandpapaer skate, <i>Bathyraja kincaidii</i> (C) off central California, as calculated from NMFS–AFSC and NMFS–NWFSC trawl surveys conducted during 1997–2010.</p

Descriptive statistics, depth range, and mesoscale habitat electivity for central California skates as calculated from manned submersible data in the greater Monterey Bay region.

<p><i>n</i> = sample size, %FO = frequency of occurrence, km = kilometers, m = meters.</p><p>* = p<0.05 for Chi-square test. Number (<i>n</i>), frequency of occurrence (%FO), density (#/km²), depth range and mesoscale habitat electivity (after Manly et al. 1993) of the California skate assemblage among 1203 submersible dive transects conducted at depths of 24–316 m.</p><p>Descriptive statistics, depth range, and mesoscale habitat electivity for central California skates as calculated from manned submersible data in the greater Monterey Bay region.</p

ZIP model predictions of median and maximum count, and associated depth and latitude ranges, and GAM model predictions of temperature for central California skate species/life stages throughout the study site.

<p>N = number of hauls, m = meters, C = degrees Celcius, Max = maximum. Results were calculated from National Marine Fisheries Service–Northwest Fisheries Science Center trawl data collected during 2003–2010 among 235 tows throughout the study region. Common depth, temperature, and latitudinal range are included (see methods), as well as the depth and latitude at which the maximum number of skates were predicted.</p><p>ZIP model predictions of median and maximum count, and associated depth and latitude ranges, and GAM model predictions of temperature for central California skate species/life stages throughout the study site.</p

ZIP model predictions of median and maximum count, and associated depth ranges, and GAM model predictions of temperature for life stages of central California skates in Monterey Bay.

<p>J = juvenile, TR = transitional, A = adult, M = male, F = female, ALL = combined life stages, N = number of hauls, m = meters, C = Celsius. Results were calculated from NMFS–SWFSC–FED trawl and longline data (<i>R. stellulata</i>, only) collected during 2002–2005 in the greater Monterey Bay region. Oceanographic season, catches with skates (Catches) and the total number of trawl or longline catches (Hauls) are included, as well as common depth and temperature ranges, and depth and temperature at which the maximum number of occurrences was predicted. Predicted median count was used as the cut-off value to determine common ranges.</p><p>ZIP model predictions of median and maximum count, and associated depth ranges, and GAM model predictions of temperature for life stages of central California skates in Monterey Bay.</p

Hot and cold spot maps for <i>Beringraja binoculata</i> and <i>Raja rhina</i>.

<p>Getis-GI Hot Spot Analysis Z-score plots of catch-per-unit-effort (kg/km) for the hardnose skates, <i>Beringraja binoculata</i> (A) and <i>Raja rhina</i> (B), in the western Gulf of Alaska, as calculated from NMFS–AFSC trawl surveys conducted during 1999–2011.</p

Details of sampling surveys conducted in the western Gulf of Alaska and off central California.

<p>Note: Data were collected yearly for the indicated ranges, with the following exceptions: NMFS–AFSC* = 1998, 2001, 2004; NMFS–AFSC** = 1997, 1999, 2001; NMFS–SWFSC–FED (submersible) = 1992–1994, 1997, 1998, 2002–2004, 2007–2009; western GOA = biennially; Kamishak Bay = 2003–2007, 2010, 2012.</p><p>* = effort was focused on continental shelf,</p><p>** = effort was focused on continental slope;</p><p>NMFS = National Marine Fisheries Service, AFSC = Alaska Fisheries Science Center, NWFSC = Northwest Fisheries Science Center, SWFSC–FED = Southwest Fisheries Science Center–Fisheries Ecology Division, MBARI = Monterey Bay Aquarium Research Institute, ADFG = Alaska Department of Fish and Game, ROV = remotely operated vehicle, N = number of samples for each method, Oct = October, Jan = January, Dec = December, Aug = August, Nov = November, Sept = September, m = meters.</p><p>Details of sampling surveys conducted in the western Gulf of Alaska and off central California.</p

Hot and cold spot maps for species richness of all Californian skates.

<p>Getis-GI Hot spot Analysis Z-score plot of species richness of skates collected from NMFS–AFSC and NMFS–NWFSC trawl surveys conducted during 1997–2010.</p