Cumulative Effects of Coastal Watershed Land Use on Chironomidae (Insecta: Diptera) Communities of Neotropical Estuaries in Costa Rica

University of Minnesota Ph.D. dissertation. July 2017. Major: Entomology. Advisor: Leonard Ferrington, Jr.. 1 computer file (PDF); xiii, 158 pages.Chironomidae assemblages are likely to provide a useful measure of biotic integrity in Neotropical estuaries of Costa Rica, which lack an intensive estuarine bioassessment tool to support environmental monitoring. However, little is known about chironomid communities in these estuaries and the cumulative effects of watershed land use on chironomid communities have not been studied. The purpose of this dissertation was to (1) quantify land cover change of six watersheds on the Caribbean coast of Costa Rica between 2001 and 2014, (2) describe all steps of the Chironomidae surface-floating pupal exuviae method in detail, including sample collection, laboratory processing, slide mounting, and genus identification, (3) investigate Chironomidae species diversity of nine estuaries across a land use gradient on the Caribbean coast of Costa Rica, (4) compare the relative effectiveness of five different DNA extraction protocols and direct PCR in isolation of DNA from chironomid pupal exuviae, and (5) assess the efficiency of using standard DNA barcoding for species identification of chironomid pupal exuviae. I found that watershed-scale land use analyses showed agricultural expansion and deforestation in watersheds on the northeastern coast and secondary forest regrowth on the southeastern coast of Costa Rica. I identified 228 morphospecies and 70 genera from 17,071 Chironomidae surface-floating pupal exuviae collected from nine Neotropical estuaries and that a Chironomidae Index of Biotic Integrity successfully discriminated estuaries with differing degrees of stress across a land use gradient. I extracted genomic DNA from 61.2% of 570 sampled pupal exuviae. The NucleoSpin® Tissue XS Kit, DNeasy® Blood and Tissue kit, and QuickExtract™ DNA Extraction Solution provided the best results in isolating DNA from single pupal exuviae. A total of 36.3% of 190 sampled pupal exuviae resulted in high-quality sequences for Costa Rica, but none matched known species. This knowledge is important if these aquatic communities are to be used more effectively in future biological monitoring, conservation, and integrated water resource management of Neotropical estuaries

Amelanotic Esophageal Malignant Melanoma: Case Report and Short Review of the Literature

Malignant melanoma in the esophagus is a rare condition which has been described only occasionally in case reports or in larger series of patients with esophageal disease. We describe here the very rare case of a patient who presented initially with a 2-month history of dysphagia and weight loss which led to the endoscopic diagnosis of an unclear lesion in the distal esophagus. Biopsies were taken revealing positive immunohistochemical staining against HMB-45. As there were no signs of skin melanoma and there was an absence of pigmentation, a diagnosis of primary amelanotic malignant melanoma was made. Primary staging of the lesion was completed with computed tomography (CT), which revealed a locally advanced tumor with lymph node metastases at the lesser curvature of the stomach and celiac trunk. As there is still a lack of potential protocols for multimodal neoadjuvant treatment for this rare tumor entity, a palliative abdominothoracic esophagectomy with systemic lymphadenectomy and intrathoracic anastomosis was carried out. Due to an intraoperative R2 situation, clip marking was performed to allow postoperative radiotherapy. Two months postoperatively, the planning CT scan for radiotherapy revealed progression of the retroperitoneal tumor mass, which was enclosing the celiac trunk, renal vein, and superior mesenteric artery. Multiple new liver and lung metastases were also found. During the following weeks, the patient developed acute renal failure and was admitted for dialysis, and the planned radiotherapy was deferred. At the end of May 2007, 4 months after the primary diagnosis, the patient died due to acute renal failure

Teacher-Initiated Discourse Moves in Reformed Undergraduate STEM Learning Environments

Faculty advisor: Abdi WarfaThis research was supported by the Undergraduate Research Opportunities Program (UROP)

Parsing human skeletons in an operating room

Multiple human pose estimation is an important yet challenging problem. In an Operating Room (OR) environment, the 3D body poses of surgeons and medical staff can provide important clues for surgical workflow analysis. For that purpose, we propose an algorithm for localizing and recovering body poses of multiple human in an OR environment under a multi-camera setup. Our model builds on 3D Pictorial Structures (3DPS) and 2D body part localization across all camera views, using Convolutional Neural Networks (ConvNets). To evaluate our algorithm, we introduce a dataset captured in a real OR environment. Our dataset is unique, challenging and publicly available with annotated ground truths. Our proposed algorithm yields to promising pose estimation results on this dataset