Vertical Resource Partitioning and Sexuality of Three Sympatric Species of Red Sea Sandfishes (Xyrichtys melanopus, Labridae; Trichonotus nikii, Trichonotidae; Gorgasia sp., Congridae)

Three species of marine sandfishes were studied from 1984 to 1986. Their inter- and intraspecific behavior was monitored during the daylight hours to examine interactions that could result in the vertical stratification of the species over the sandy bottom within the fringing and patch reefs in the north Red Sea. Horizontal plankton tows were taken at three heights and three times a day. These samples were compared to stomach contents of the fishes to determine the trophic relationships in the community and their affects on spatial relations between the species . Prey specificities of the fishes were determined by using an electivity measure. Using paraffin histology, Xyrichtys melanopus was determined to be a monandric protogynous hermaphrodite and Trichonotus nikii, a gonochorist. Previous work on the mating systems and territoriality of all three sandfish species helped in part to explain the vertical spatial arrangement of the sandfish species within the community. Effects of pollution on the b iota of the Northern Gulf of Aqaba are noted

STAT3 acts through pre-existing nucleosome-depleted regions bound by FOS during an epigenetic switch linking inflammation to cancer

Background: Transient induction of the Src oncoprotein in a non-transformed breast cell line can initiate an epigenetic switch to a cancer cell via a positive feedback loop that involves activation of the signal transducer and activator of transcription 3 protein (STAT3) and NF-κB transcription factors. Results: We show that during the transformation process, nucleosome-depleted regions (defined by formaldehyde-assisted isolation of regulatory elements (FAIRE)) are largely unchanged and that both before and during transformation, STAT3 binds almost exclusively to previously open chromatin regions. Roughly, a third of the transformation-inducible genes require STAT3 for the induction. STAT3 and NF-κB appear to drive the regulation of different gene sets during the transformation process. Interestingly, STAT3 directly regulates the expression of NFKB1, which encodes a subunit of NF-κB, and IL6, a cytokine that stimulates STAT3 activity. Lastly, many STAT3 binding sites are also bound by FOS and the expression of several AP-1 factors is altered during transformation in a STAT3-dependent manner, suggesting that STAT3 may cooperate with AP-1 proteins. Conclusions: These observations uncover additional complexities to the inflammatory feedback loop that are likely to contribute to the epigenetic switch. In addition, gene expression changes during transformation, whether driven by pre-existing or induced transcription factors, occur largely through pre-existing nucleosome-depleted regions. Electronic supplementary material The online version of this article (doi:10.1186/1756-8935-8-7) contains supplementary material, which is available to authorized users