Genome wide expression profiling of two accession of G. herbaceum L. in response to drought

<p>Abstract</p> <p>Background</p> <p>Genome-wide gene expression profiling and detailed physiological investigation were used for understanding the molecular mechanism and physiological response of <it>Gossypium herbaceum</it>, which governs the adaptability of plants in drought conditions. Recently, microarray-based gene expression analysis is commonly used to decipher genes and genetic networks controlling the traits of interest. However, the results of such an analysis are often plagued due to a limited number of genes (probe sets) on microarrays. On the other hand, pyrosequencing of a transcriptome has the potential to detect rare as well as a large number of transcripts in the samples quantitatively. We used Affymetrix microarray as well as Roche's GS-FLX transcriptome sequencing for a comparative analysis of cotton transcriptome in leaf tissues under drought conditions.</p> <p>Results</p> <p>Fourteen accessions of <it>Gossypium herbaceum </it>were subjected to mannitol stress for preliminary screening; two accessions, namely Vagad and RAHS-14, were selected as being the most tolerant and most sensitive to osmotic stress, respectively. Affymetrix cotton arrays containing 24,045 probe sets and Roche's GS-FLX transcriptome sequencing of leaf tissue were used to analyze the gene expression profiling of Vagad and RAHS-14 under drought conditions. The analysis of physiological measurements and gene expression profiling showed that Vagad has the inherent ability to sense drought at a much earlier stage and to respond to it in a much more efficient manner than does RAHS-14. Gene Ontology (GO) studies showed that the phenyl propanoid pathway, pigment biosynthesis, polyketide biosynthesis, and other secondary metabolite pathways were enriched in Vagad under control and drought conditions as compared with RAHS-14. Similarly, GO analysis of transcriptome sequencing showed that the GO terms <it>responses to various abiotic stresses </it>were significantly higher in Vagad. Among the classes of transcription factors (TFs) uniquely expressed in both accessions, RAHS-14 showed the expression of ERF and WRKY families. The unique expression of ERFs in response to drought conditions reveals that RAHS-14 responds to drought by inducing senescence. This was further supported by transcriptome analysis which revealed that RAHS-14 responds to drought by inducing many transcripts related to senescence and cell death.</p> <p>Conclusion</p> <p>The comparative genome-wide gene expression profiling study of two accessions of <it>G.herbaceum </it>under drought stress deciphers the differential patterns of gene expression, including TFs and physiologically relevant processes. Our results indicate that drought tolerance observed in Vagad is not because of a single molecular reason but is rather due to several unique mechanisms which Vagad has developed as an adaptation strategy.</p

Phytochemical Analyses, Antioxidant and Anticancer Activities of Ethanolic Leaf Extracts of <i>Moringa oleifera</i> Lam. Varieties

Moringa oleifera Lam. (Moringaceae) is revered as s ‘miracle tree’ due to its remarkable nutritional, medicinal and industrial uses. In our study, a comparative analysis of the nutritional parameters (antioxidant activity, sugar content—TSS, total soluble proteins—TSP and mineral contents), phytochemicals (HPLC analysis of four anticancer compounds), and cytotoxicity of M. oleifera leaf extracts (MLEs) of five selected varieties (conventional, PKM-1, PKM-2, ODC, and Jaffna), was performed. Jaffna variety possessed the highest antioxidant activity (FRAP) followed by other four varieties. The trend observed was: Jaffna (9.47 µg/mL, 18.48 µg/mL, 29.39 µg/mL, and 35.37 µg/mL) > PKM-1 (4.82 µg/mL, 7.63 µg/mL, 22.33 µg/mL, and 27.71 µg/mL) > PKM-2 (2.10 µg/mL, 7.04 µg/mL, 13.18 µg/mL, and 21.78 µg/mL) > ODC (0.17 µg/mL, 2.10 µg/mL, 4.41 µg/mL and 13.94 µg/mL) > Conventional (0.05 µg/mL, 1.08 µg/mL, 2.86 µg/mL, and 5.40 µg/mL), total soluble proteins (TSP) [0.69 ± 0.01 and 0.94 ± 0.01 µg/mL (young and mature stage, respectively)], sugar content (TSS) [0.39 ± 0.01 and 0.51 ± 0.01 µg/mL (young and mature stage, respectively)], chlorophyll content [1.07 ± 0.01 (plantlet stage), 1.36 ± 0.003 (vegetative-stage), 0.82 ± 0.004 (reproductive stage) mg/g], followed by the other four varieties. The trend observed for cytotoxic activities of ethanolic MLEs on HepG2 cell line, based on the IC50 values, was conventional (1.22 mg/mL) > ODC (0.90 mg/mL) > PKM-2 (0.65 mg/mL) > PKM-1 (0.35 mg/mL) > Jaffna (0.15 mg/mL). The results of HPLC quantification of anticancer compounds [beta-sitosterol (0.244%), quercetin (0.216%), kaempferol (0.013%), and moringin (0.063%)] was also in consonance with that of MTT assay. In summary, the trend observed in all the parameters tested was Jaffna > PKM-1 > PKM-2 > ODC > conventional. Thus, Jaffna variety has a better potential to combat malnutrition and cancer and must be recommended for commercial plantations

Phytochemical Analyses, Antioxidant and Anticancer Activities of Ethanolic Leaf Extracts of Moringa oleifera Lam. Varieties

Moringa oleifera Lam. (Moringaceae) is revered as s ‘miracle tree’ due to its remarkable nutritional, medicinal and industrial uses. In our study, a comparative analysis of the nutritional parameters (antioxidant activity, sugar content—TSS, total soluble proteins—TSP and mineral contents), phytochemicals (HPLC analysis of four anticancer compounds), and cytotoxicity of M. oleifera leaf extracts (MLEs) of five selected varieties (conventional, PKM-1, PKM-2, ODC, and Jaffna), was performed. Jaffna variety possessed the highest antioxidant activity (FRAP) followed by other four varieties. The trend observed was: Jaffna (9.47 µg/mL, 18.48 µg/mL, 29.39 µg/mL, and 35.37 µg/mL) &gt; PKM-1 (4.82 µg/mL, 7.63 µg/mL, 22.33 µg/mL, and 27.71 µg/mL) &gt; PKM-2 (2.10 µg/mL, 7.04 µg/mL, 13.18 µg/mL, and 21.78 µg/mL) &gt; ODC (0.17 µg/mL, 2.10 µg/mL, 4.41 µg/mL and 13.94 µg/mL) &gt; Conventional (0.05 µg/mL, 1.08 µg/mL, 2.86 µg/mL, and 5.40 µg/mL), total soluble proteins (TSP) [0.69 ± 0.01 and 0.94 ± 0.01 µg/mL (young and mature stage, respectively)], sugar content (TSS) [0.39 ± 0.01 and 0.51 ± 0.01 µg/mL (young and mature stage, respectively)], chlorophyll content [1.07 ± 0.01 (plantlet stage), 1.36 ± 0.003 (vegetative-stage), 0.82 ± 0.004 (reproductive stage) mg/g], followed by the other four varieties. The trend observed for cytotoxic activities of ethanolic MLEs on HepG2 cell line, based on the IC50 values, was conventional (1.22 mg/mL) &gt; ODC (0.90 mg/mL) &gt; PKM-2 (0.65 mg/mL) &gt; PKM-1 (0.35 mg/mL) &gt; Jaffna (0.15 mg/mL). The results of HPLC quantification of anticancer compounds [beta-sitosterol (0.244%), quercetin (0.216%), kaempferol (0.013%), and moringin (0.063%)] was also in consonance with that of MTT assay. In summary, the trend observed in all the parameters tested was Jaffna &gt; PKM-1 &gt; PKM-2 &gt; ODC &gt; conventional. Thus, Jaffna variety has a better potential to combat malnutrition and cancer and must be recommended for commercial plantations

Phytochemicals: A Promising Alternative for the Prevention of Alzheimer’s Disease

Alzheimer’s disease (AD) is a neurological condition that worsens with ageing and affects memory and cognitive function. Presently more than 55 million individuals are affected by AD all over the world, and it is a leading cause of death in old age. The main purpose of this paper is to review the phytochemical constituents of different plants that are used for the treatment of AD. A thorough and organized review of the existing literature was conducted, and the data under the different sections were found using a computerized bibliographic search through the use of databases such as PubMed, Web of Science, Google Scholar, Scopus, CAB Abstracts, MEDLINE, EMBASE, INMEDPLAN, NATTS, and numerous other websites. Around 360 papers were screened, and, out of that, 258 papers were selected on the basis of keywords and relevant information that needed to be included in this review. A total of 55 plants belonging to different families have been reported to possess different bioactive compounds (galantamine, curcumin, silymarin, and many more) that play a significant role in the treatment of AD. These plants possess anti-inflammatory, antioxidant, anticholinesterase, and anti-amyloid properties and are safe for consumption. This paper focuses on the taxonomic details of the plants, the mode of action of their phytochemicals, their safety, future prospects, limitations, and sustainability criteria for the effective treatment of AD

Whitefly (Bemisia tabaci) Management (WFM) Strategies for Sustainable Agriculture: A Review

The whitefly (Bemisia tabaci Gennadius) is a notorious devastating sap-sucking insect pest that causes substantial crop damage and yield losses due to direct feeding by both nymphs and adults and also through transmission of viruses and diseases. Although the foliar application of synthetic pesticides is crucial for efficient control of B. tabaci, it has adverse effects such as environmental pollution, resistance and resurgence of the pest, toxicity to pollinators, and crop yield penalty. Thus, a suitable, safe, and robust strategy for the control of whiteflies in the agricultural field is needed. The reports on whitefly-resistant transgenic plants are scanty, non-reproducible, and/or need secondary trials and clearance from the Genetic Engineering Appraisal Committee (GEAC), the Ministry of Environment and Forests (MoEF), and the Environmental Protection Agency (EPA). The present review encompasses explicit information compiled from 364 articles on the traditional, mechanical, biological, biotechnological, and chemical strategies for whitefly management (WFM), IPM strategy, and future prospects of WFM for food and agriculture security

Chickpea (<i>Cicer arietinum</i> L.) Biology and Biotechnology: From Domestication to Biofortification and Biopharming

Chickpea (Cicer arietinum L.), the world’s second most consumed legume crop, is cultivated in more than 50 countries around the world. It is a boon for diabetics and is an excellent source of important nutrients such as vitamins A, C, E, K, B1–B3, B5, B6, B9 and minerals (Fe, Zn, Mg and Ca) which all have beneficial effects on human health. By 2050, the world population can cross 9 billion, and in order to feed the teaming millions, chickpea production should also be increased, as it is a healthy alternative to wheat flour and a boon for diabetics. Moreover, it is an important legume that is crucial for food, nutrition, and health security and the livelihood of the small-scale farmers with poor resources, in developing countries. Although marvelous improvement has been made in the development of biotic and abiotic stress-resistant varieties, still there are many lacunae, and to fulfill that, the incorporation of genomic technologies in chickpea breeding (genomics-assisted breeding, high-throughput and precise-phenotyping and implementation of novel breeding strategies) will facilitate the researchers in developing high yielding, climate resilient, water use efficient, salt-tolerant, insect/pathogen resistant varieties, acceptable to farmers, consumers, and industries. This review focuses on the origin and distribution, nutritional profile, genomic studies, and recent updates on crop improvement strategies for combating abiotic and biotic stresses in chickpea

Application of Natural Coagulants in Water Treatment: A Sustainable Alternative to Chemicals

Water treatment (WT) is currently among the major areas of research due to the depletion of water resources and fearmongering regarding environmental pollution, which has compelled the upgrading of conventional WT technology towards recycling and reuse. This review aims to provide the current state of natural coagulants and their application in the purification of surface water as sufficient clean water is required for household needs, health security, and environmental safety. A thorough and systematic review of the existing literature was performed, and the information related to water treatment using natural coagulants was compiled from 237 articles under various sections using a computerized bibliographic search via PubMed, Scopus, Web of Science, Google Scholar, CAB Abstracts, and several websites. The work provides explicit information related to natural coagulants and their merits and limitations, outlines methods to increase their coagulation performance, and highlights their coagulation mechanism, efficacy, valorization potential, and sustainability. From the information obtained, it can be concluded that although chemical coagulants are efficient in WT, they are usually expensive, toxic, associated with health issues, and thus non-sustainable. A sustainable alternative is the use of natural coagulants, which are readily available, economical, easy to use, biodegradable, non-toxic, eco-friendly, effective, and generate lower sludge volumes. They work via an adsorption process that involves polymeric bridging or neutralization of the charge. The WT efficiency of natural coagulants ranges from 50–500 nephelometric turbidity units (NTUs), which is similar to chemicals. Thus, they can be deployed in WT regimes and can contribute to the health security of rural populations in developing countries. It is unfortunate that, despite the known benefits of natural coagulants, their acceptance, commercialization, and widespread industrial application across the globe are still low. Therefore, there is a need for more exhaustive investigations regarding the mode of action, adoption, and commercialization of natural coagulants as a sustainable alternative to chemicals for a circular economy

Plant Synthetic Promoters: Advancement and Prospective

Native/endogenous promoters have several fundamental limitations in terms of their size, Cis-elements distribution/patterning, and mode of induction, which is ultimately reflected in their insufficient transcriptional activity. Several customized synthetic promoters were designed and tested in plants during the past decade to circumvent such constraints. Such synthetic promoters have a built-in capacity to drive the expression of the foreign genes at their maximum amplitude in plant orthologous systems. The basic structure and function of the promoter has been discussed in this review, with emphasis on the role of the Cis-element in regulating gene expression. In addition to this, the necessity of synthetic promoters in the arena of plant biology has been highlighted. This review also provides explicit information on the two major approaches for developing plant-based synthetic promoters: the conventional approach (by utilizing the basic knowledge of promoter structure and Cis-trans interaction) and the advancement in gene editing technology. The success of plant genetic manipulation relies on the promoter efficiency and the expression level of the transgene. Therefore, advancements in the field of synthetic promoters has enormous potential in genetic engineering-mediated crop improvement

<i>Carica papaya</i> L.: A Tropical Fruit with Benefits beyond the Tropics

Carica papaya L. (family: Caricaceae), also known as ‘papaya,’ is a tropical American fruit tree. Due to the bioactive components (carpaines, BITC, benzyl glucosinolates, latex, papain, zeaxanthin, choline, etc.) in its seeds, leaves, and fruits, it is revered for its excellent antioxidant, digestive, and nutraceutical benefits. Papayas are high in vitamins A, B, C, E, and K, folate, pantothenic acid, zeaxanthin, lycopene, lutein, magnesium, copper, calcium, and potassium. Being rich in fiber, antioxidants, and vitamin C, it lowers the cholesterol in the arteries; prevents arthritis; reduces aging, cancer, macular degradation, risk of cardiovascular diseases, and stress; increases platelet count; controls dengue fever; facilitates digestion, and lowers body weight. Papaya leaf extract, with many in vitro and case studies in combination therapies with modern medicine, especially for cancers and many other viral diseases, has been found to be an efficient cure. Humans have cultivated papaya cultivars for millions of years because of their significant commercial, medicinal, and agronomic value. Several reports have been published on the genetic modification of papaya for resistance to abiotic (herbicide, Al toxicity, etc.) and biotic stressors (PRSV, mites, Phytophthora, etc.), delaying ripening, and improving shelf life. However, most of these traits have not been introduced globally to all commercial papaya varieties. Unraveling the genetics of papaya has shed light on various domestication impacts, evolutionary patterns, and sex determination in fruit tree crops. It also serves as a potential step toward developing new cultivars to fight climate-oriented stress. Furthermore, extensive research on the stability of the ‘transgene’ across generations, and the ‘yield-penalty’ caused by the transgene, is required. Thus, meticulous crop improvement research on commercial papaya cultivars is necessary for long-term food and health security. This review article encompasses information on the traditional and modern medicinal uses, nutritional properties, phytochemistry, diseases and etiology, post-harvest measures, genomics, biotechnological strategies (for papaya improvement), and value-added products of papaya for food and health security