The role of disease in bee foraging ecology

Diseases have important but understudied effects on bee foraging ecology. Bees transmit and contract diseases on flowers, but floral traits including plant volatiles and inflorescence architecture may affect transmission. Diseases spill over from managed or invasive pollinators to native wild bee species, and impacts of emerging diseases are of particular concern, threatening pollinator populations and pollination services. Here we review how parasites can alter the foraging behaviour of bees by changing floral preferences and impairing foraging efficiency. We also consider how changes to pollinator behaviours alter or reduce pollination services. The availability of diverse floral resources can, however, ameliorate bee diseases and their impacts through better nutrition and antimicrobial effects of plant compounds in pollen and nectar

Coupling slot-waveguide cavities for large-scale quantum optical devices

By offering effective modal volumes significantly less than a cubic wavelength, slot-waveguide cavities offer a new in-road into strong atom-photon coupling in the visible regime. Here we explore two-dimensional arrays of coupled slot cavities which underpin designs for novel quantum emulators and polaritonic quantum phase transition devices. Specifically, we investigate the lateral coupling characteristics of diamond-air and GaP-air slot waveguides using numerically-assisted coupled-mode theory, and the longitudinal coupling properties via distributed Bragg reflectors using mode-propagation simulations. We find that slot-waveguide cavities in the Fabry-Perot arrangement can be coupled and effectively treated with a tight-binding description, and are a suitable platform for realizing Jaynes-Cummings-Hubbard physics.Comment: 11 pages, 7 figures, submitte

Natural processes influencing pollinator health

Evidence from the last few decades indicates that pollinator abundance and diversity are at risk, with many species in decline. Anthropogenic impacts have been the focus of much recent work on the causes of these declines. However, natural processes, from plant chemistry, nutrition and microbial associations to landscape and habitat change, can also profoundly influence pollinator health. Here, we argue that these natural processes require greater attention and may even provide solutions to the deteriorating outlook for pollinators. Existing studies also focus on the decline of individuals and colonies and only occasionally at population levels. In the light of this we redefine pollinator health and argue that a top-down approach is required focusing at the ecological level of communities. We use examples from the primary research, opinion and review articles published in this special issue to illustrate how natural processes influence pollinator health, from community to individuals, and highlight where some of these processes could mitigate the challenges of anthropogenic and natural drivers of change. This article is part of the theme issue ‘Natural processes influencing pollinator health: from chemistry to landscapes’.The Peter Sowerby Foundation and UKRI grants.https://royalsocietypublishing.org/journal/rstbdm2022Zoology and Entomolog

Vibrational Excitations in Weakly Coupled Single-Molecule Junctions: A Computational Analysis

In bulk systems, molecules are routinely identified by their vibrational spectrum using Raman or infrared spectroscopy. In recent years, vibrational excitation lines have been observed in low-temperature conductance measurements on single molecule junctions and they can provide a similar means of identification. We present a method to efficiently calculate these excitation lines in weakly coupled, gateable single-molecule junctions, using a combination of ab initio density functional theory and rate equations. Our method takes transitions from excited to excited vibrational state into account by evaluating the Franck-Condon factors for an arbitrary number of vibrational quanta, and is therefore able to predict qualitatively different behaviour from calculations limited to transitions from ground state to excited vibrational state. We find that the vibrational spectrum is sensitive to the molecular contact geometry and the charge state, and that it is generally necessary to take more than one vibrational quantum into account. Quantitative comparison to previously reported measurements on pi-conjugated molecules reveals that our method is able to characterize the vibrational excitations and can be used to identify single molecules in a junction. The method is computationally feasible on commodity hardware.Comment: 9 pages, 7 figure

Processing CCD Images to Detect Transits of Earth-Sized Planets: Maximizing Sensitivity While Achieving Reasonable Downlink Requirements

We have performed end-to-end laboratory and numerical simulations to demonstrate the capability of differential photometry under realistic operating conditions to detect transits of Earth-sized planets orbiting solar-like stars. Data acquisition and processing were conducted using the same methods planned for the proposed Kepler Mission. These included performing aperture photometry on large-format CCD images of an artificial star fields obtained without a shutter at a readout rate of 1 megapixel/sec, detecting and removing cosmic rays from individual exposures and making the necessary corrections for nonlinearity and shutterless operation in the absence of darks. We will discuss the image processing tasks performed `on-board' the simulated spacecraft, which yielded raw photometry and ancillary data used to monitor and correct for systematic effects, and the data processing and analysis tasks conducted to obtain lightcurves from the raw data and characterize the detectability of transits. The laboratory results are discussed along with the results of a numerical simulation carried out in parallel with the laboratory simulation. These two simulations demonstrate that a system-level differential photometric precision of 10-5 on five- hour intervals can be achieved under realistic conditions

Flagellum removal by a nectar metabolite inhibits infectivity of a bumblebee parasite

Plant secondary metabolites can act as natural “medicines” for animals against parasites [1, 2, 3]. Some nectar metabolites, for example, reduce parasite infections in bees [4, 5, 6, 7]. Understanding these interactions is urgent, as bees provide critical pollination services [8, 9, 10, 11] but are threatened by interacting stressors including diseases [11, 12, 13, 14, 15, 16, 17]. Declining plant diversity through anthropogenic landscape change [18, 19, 20, 21] could reduce the availability of medicinal nectar plants for pollinators, exacerbating their decline [22]. Existing studies are, however, limited by (i) a lack of mechanistic insights into how plant metabolites affect pollinator diseases, and (ii) the restriction to few, commercially available chemicals, thereby potentially neglecting plants with the biggest antiparasitic effects. To rapidly identify plants with the greatest potential as natural bee medicines, we developed a bioactivity-directed-fractionation assay for nectar metabolites. We evaluated 17 important nectar plants against the common bumblebee pathogen Crithidia bombi (Trypanosomatidae) [16, 23, 24, 25, 26]. The most bioactive species was heather (Calluna vulgaris), the second most productive UK nectar plant [20]. We identified 4-(3-oxobut-1-enylidene)-3,5,5-trimethylcyclohex-2-en-1-one (callunene) from heather nectar as potent inhibitor of C. bombi. Wild bumblebees (Bombus terrestris) foraging on heather ingest callunene at concentrations causing complete C. bombi inhibition. Feeding on callunene was prophylactic against infections. We show C. bombi establishes infections by flagellar anchoring to the ileum epithelium. Short-term callunene exposure induced flagellum loss in C. bombi choanomastigotes, resulting in a loss of infectivity. We conclude plant secondary metabolites can disrupt parasite flagellum attachment, revealing a mechanism behind their prophylactic effects. The decline of heathlands [27, 28, 29, 30] reduces the availability of natural bee “medicine” and could exacerbate the contribution of diseases to pollinator declines

Agri-environment scheme nectar chemistry can suppress the social epidemiology of parasites in an important pollinator

Emergent infectious diseases are one of the main drivers of species loss. Emergent infection with the microsporidian Nosema bombi has been implicated in the population and range declines of a suite of North American bumblebees, a group of important pollinators. Previous work has shown that phytochemicals found in pollen and nectar can negatively impact parasites in individuals, but how this relates to social epidemiology and by extension whether plants can be effectively used as pollinator disease management strategies remains unexplored. Here we undertook a comprehensive screen of UK agri-environment scheme plants, a programme designed to benefit pollinators and wider biodiversity in agricultural settings, for phytochemicals in pollen and nectar using liquid chromatography and mass spectrometry. Caffeine, which occurs across a range of plant families, was identified in the nectar of Sainfoin (Onobrychis viciifolia), a component of UK agri-environment schemes and a major global crop. We showed that caffeine significantly reduces N. bombi infection intensity, both prophylactically and therapeutically, in individual bumblebees (Bombus terrestris), and, for the first time, that such effects impact social epidemiology, with colonies reared from wild caught queens having both lower prevalence and intensity of infection. Furthermore, infection prevalence was lower in foraging bumblebees from caffeine treated colonies, suggesting a likely reduction in population-level transmission. Combined, these results show that N. bombi is less likely to be transmitted intra-colonially when bumblebees consume naturally-available caffeine, and that this may in turn reduce environmental prevalence. Consequently, our results demonstrate that floral phytochemicals at ecologically relevant concentrations can impact pollinator disease epidemiology and that planting strategies that increase floral abundance to support biodiversity could be co-opted as disease management tools

The Influence of HIV on the Evolution of Mycobacterium tuberculosis.

HIV significantly affects the immunological environment during tuberculosis coinfection, and therefore may influence the selective landscape upon which M. tuberculosis evolves. To test this hypothesis whole genome sequences were determined for 169 South African M. tuberculosis strains from HIV-1 coinfected and uninfected individuals and analyzed using two Bayesian codon-model based selection analysis approaches: FUBAR which was used to detect persistent positive and negative selection (selection respectively favoring and disfavoring nonsynonymous substitutions); and MEDS which was used to detect episodic directional selection specifically favoring nonsynonymous substitutions within HIV-1 infected individuals. Among the 25,251 polymorphic codon sites analyzed, FUBAR revealed that 189-fold more were detectably evolving under persistent negative selection than were evolving under persistent positive selection. Three specific codon sites within the genes celA2b, katG, and cyp138 were identified by MEDS as displaying significant evidence of evolving under directional selection influenced by HIV-1 coinfection. All three genes encode proteins that may indirectly interact with human proteins that, in turn, interact functionally with HIV proteins. Unexpectedly, epitope encoding regions were enriched for sites displaying weak evidence of directional selection influenced by HIV-1. Although the low degree of genetic diversity observed in our M. tuberculosis data set means that these results should be interpreted carefully, the effects of HIV-1 on epitope evolution in M. tuberculosis may have implications for the design of M. tuberculosis vaccines that are intended for use in populations with high HIV-1 infection rates

Infrared nanoscopy of Dirac plasmons at the graphene-SiO2 interface

We report on infrared (IR) nanoscopy of 2D plasmon excitations of Dirac fermions in graphene. This is achieved by confining mid-IR radiation at the apex of a nanoscale tip: an approach yielding two orders of magnitude increase in the value of in-plane component of incident wavevector q compared to free space propagation. At these high wavevectors, the Dirac plasmon is found to dramatically enhance the near-field interaction with mid-IR surface phonons of SiO2 substrate. Our data augmented by detailed modeling establish graphene as a new medium supporting plasmonic effects that can be controlled by gate voltage.Comment: 12 pages, 4 figure