Generalized Glauber dynamics for inference in biology

Large interacting systems in biology often exhibit emergent dynamics, such as coexistence of multiple time scales, manifested by fat tails in the distribution of waiting times. While existing tools in statistical inference, such as maximum entropy models, reproduce the empirical steady state distributions, it remains challenging to learn dynamical models. We present a novel inference method, called generalized Glauber dynamics. Constructed through a non-Markovian fluctuation dissipation theorem, generalized Glauber dynamics tunes the dynamics of an interacting system, while keeping the steady state distribution fixed. We motivate the need for the method on real data from Eco-HAB, an automated habitat for testing behavior in groups of mice under semi-naturalistic conditions, and present it on simple Ising spin systems. We show its applicability for experimental data, by inferring dynamical models of social interactions in a group of mice that reproduce both its collective behavior and the long tails observed in individual dynamics

Brain size, gut size and cognitive abilities : the energy trade-offs tested in artificial selection experiment

The enlarged brains of homeotherms bring behavioural advantages, but also incur high energy expenditures. The ‘expensive brain’ (EB) hypothesis posits that the energetic costs of the enlarged brain and the resulting increased cognitive abilities (CA) were met by either increased energy turnover or reduced allocation to other expensive organs, such as the gut. We tested the EB hypothesis by analysing correlated responses to selection in an experimental evolution model system, which comprises line types of laboratory mice selected for high or low basal metabolic rate (BMR), maximum (VO2max) metabolic rates and random-bred (unselected) lines. The traits are implicated in the evolution of homeothermy, having been pre-requisites for the encephalization and exceptional CA of mammals, including humans. High-BMR mice had bigger guts, but not brains, than mice of other line types. Yet, they were superior in the cognitive tasks carried out in both reward and avoidance learning contexts and had higher neuronal plasticity (indexed as the long-term potentiation) than their counterparts. Our data indicate that the evolutionary increase of CA in mammals was initially associated with increased BMR and brain plasticity. It was also fuelled by an enlarged gut, which was not traded off for brain size

Astrocytic β-catenin signaling via TCF7L2 regulates synapse development and social behavior

The Wnt/β-catenin pathway contains multiple high-confidence risk genes that are linked to neurodevelopmental disorders, including autism spectrum disorder. However, its ubiquitous roles across brain cell types and developmental stages have made it challenging to define its impact on neural circuit development and behavior. Here, we show that TCF7L2, which is a key transcriptional effector of the Wnt/β-catenin pathway, plays a cell-autonomous role in postnatal astrocyte maturation and impacts adult social behavior. TCF7L2 was the dominant Wnt effector that was expressed in both mouse and human astrocytes, with a peak during astrocyte maturation. The conditional knockout of Tcf7l2 in postnatal astrocytes led to an enlargement of astrocytes with defective tiling and gap junction coupling. These mice also exhibited an increase in the number of cortical excitatory and inhibitory synapses and a marked increase in social interaction by adulthood. These data reveal an astrocytic role for developmental Wnt/β-catenin signaling in restricting excitatory synapse numbers and regulating adult social behavior

Controlling complexity: the clinical relevance of mouse complex genetics.

Experimental animal models are essential to obtain basic knowledge of the underlying biological mechanisms in human diseases. Here, we review major contributions to biomedical research and discoveries that were obtained in the mouse model by using forward genetics approaches and that provided key insights into the biology of human diseases and paved the way for the development of novel therapeutic approaches

Reciprocal patterns of c-Fos expression in the medial prefrontal cortex and amygdala after extinction and renewal of conditioned fear

After extinction of conditioned fear, memory for the conditioning and extinction experiences becomes context dependent. Fear is suppressed in the extinction context, but renews in other contexts. This study characterizes the neural circuitry underlying the context-dependent retrieval of extinguished fear memories using c-Fos immunohistochemistry. After fear conditioning and extinction to an auditory conditioned stimulus (CS), rats were presented with the extin- guished CS in either the extinction context or a second context, and then sacrificed. Presentation of the CS in the extinction context yielded low levels of conditioned freezing and induced c-Fos expression in the infralimbic division of the medial prefrontal cortex, the intercalated nuclei of the amygdala, and the dentate gyrus (DG). In contrast, presentation of the CS outside of the extinction context yielded high levels of conditioned freezing and induced c-Fos expression in the prelimbic division of the medial prefrontal cortex, the lateral and basolateral nuclei of the amygdala, and the medial division of the central nucleus of the amygdala. Hippocampal areas CA1 and CA3 exhibited c-Fos expression when the CS was presented in either context. These data suggest that the context specificity of extinction is mediated by prefrontal modulation of amygdala activity, and that the hippocampus has a fundamental role in con- textual memory retrieval.NIH (RO1MH065961)Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/83235/1/knapskaLM09.pd

The promotion of publishing company`s products in international market

Bakalaura darbā autors analizē izdevniecības uzņēmuma produktu virzīšanas iespējas starptautiskajā tirgū. Darba mērķis, ir pamatojoties uz teorijā un analīzē gūtajām atziņām par produktu virzīšanas tirgū metodēm, analizējot Latvijas lielāko nacionālo izdevniecību „Žurnāls Santa” un Eiropas lielākās izdevniecības, analizējot starptautisko izdevniecības produktu tirgu, un produktu konkurētspēju starptautiskajā tirgū, noteikt, ka izdevniecībai SIA „Žurnāls Santa” ir konkurētspējīgi produkti, kurus ir iespējams virzīt starptautiskajā tirgū. Bakalaura darbs sastāv no ievada, trim nodaļām, secinājumu un priekšlikumu daļas, kā arī pielikumiem. Darbs sastāv no 80 lappusēm, tabulām un 3 pielikumiem. Atslēgvārdi: izdevniecības produktu virzīšana tirgū, tirgus struktūras analīze, starptautiskais tirgus, konkurentu analīze.Author of the bachelor analyze opportunities of the publishing company product promotion in international market. The goal of bachelor is based on the theoretical part and analysis about product promotion methods in the market, by analysis of Latvia`s largest publishing companies "Žurnāls Santa" and Europes largest publishing companies, analysis of the international market for printed output and product competitiveness in the international market, provide that the publishing company "Žurnāls Santa" has competitive products, which can be promoted in international market. Bachelor consists of introduction, three chapters, par of conclusions and suggestions, and attachments. Bachelor consists of 80 pages, tables and three attachments. Keywords: product promotion, market structure analysis, international market, competitor analysis

IntelliCage as a tool for measuring mouse behavior – 20 years perspective

Since the 1980s, we have witnessed the rapid development of genetically modified mouse models of human diseases. A large number of transgenic and knockout mice have been utilized in basic and applied research, including models of neurodegenerative and neuropsychiatric disorders. To assess the biological function of mutated genes, modern techniques are critical to detect changes in behavioral phenotypes. We review the IntelliCage, a high-throughput system that is used for behavioral screening and detailed analyses of complex behaviors in mice. The IntelliCage was introduced almost two decades ago and has been used in over 150 studies to assess both spontaneous and cognitive behaviors. We present a critical analysis of experimental data that have been generated using this device

Matrix metalloproteinase 9 (MMP-9) is indispensable for long term potentiation in the central and basal but not in the lateral nucleus of the amygdala

It has been shown that matrix metalloproteinase 9 (MMP-9) is required for synaptic plasticity, learning and memory. In particular, MMP-9 involvement in long-term potentiation (LTP, the model of synaptic plasticity) in the hippocampus and prefrontal cortex has previously been demonstrated. Recent data suggest the role of MMP-9 in amygdala-dependent learning and memory. Nothing is known, however, about its physiological correlates in the specific pathways in the amygdala. In the present study we show that LTP in the basal and central but not lateral amygdala is affected by MMP-9 knock-out. The MMP-9 dependency of LTP was confirmed in brain slices treated with a specific MMP-9 inhibitor. The results suggest that MMP-9 plays different roles in synaptic plasticity in different nuclei of the amygdala