Association analysis of tissue inhibitor of metalloproteinase2 gene polymorphisms with COPD in Egyptians

AbstractProteinase/antiproteinase imbalance is recognized to play an important role in the pathogenesis of chronic obstructive pulmonary disease (COPD). A relative increase in the activities of matrix metalloproteinases might be caused by mutations of tissue inhibitor of metalloproteinase2 (TIMP2). Recently, two polymorphisms of the TIMP2 gene, +853 G/A and −418 G/C (+551 and −720 from the translation initiation site), have been shown to be associated with the development of COPD in the Japanese population. In this study, a case-control association analysis for these polymorphisms was conducted in the Egyptian population using 106 COPD patients and 72 healthy controls. The genotype frequency of +853 G/A was significantly different between the patient and the control groups (P=0.029), although no significant difference was detected in the allele frequency between the two groups. These results suggest that the +853 G/A polymorphism of the TIMP2 gene might be associated with COPD across ethnicities. In contrast, neither the distributions of genotype nor allele frequencies of –418 G/C were significantly different between the two groups, raising the possibility that a combination of different genetic factors contributes to the development of COPD in different ethnic groups

Numerical Simulation of Vortex Crystals and Merging in N-Point Vortex Systems with Circular Boundary

In two-dimensional (2D) inviscid incompressible flow, low background vorticity distribution accelerates intense vortices (clumps) to merge each other and to array in the symmetric pattern which is called ``vortex crystals''; they are observed in the experiments on pure electron plasma and the simulations of Euler fluid. Vortex merger is thought to be a result of negative ``temperature'' introduced by L. Onsager. Slight difference in the initial distribution from this leads to ``vortex crystals''. We study these phenomena by examining N-point vortex systems governed by the Hamilton equations of motion. First, we study a three-point vortex system without background distribution. It is known that a N-point vortex system with boundary exhibits chaotic behavior for N\geq 3. In order to investigate the properties of the phase space structure of this three-point vortex system with circular boundary, we examine the Poincar\'e plot of this system. Then we show that topology of the Poincar\'e plot of this system drastically changes when the parameters, which are concerned with the sign of ``temperature'', are varied. Next, we introduce a formula for energy spectrum of a N-point vortex system with circular boundary. Further, carrying out numerical computation, we reproduce a vortex crystal and a vortex merger in a few hundred point vortices system. We confirm that the energy of vortices is transferred from the clumps to the background in the course of vortex crystallization. In the vortex merging process, we numerically calculate the energy spectrum introduced above and confirm that it behaves as k^{-\alpha},(\alpha\approx 2.2-2.8) at the region 10^0<k<10^1 after the merging.Comment: 30 pages, 11 figures. to be published in Journal of Physical Society of Japan Vol.74 No.

Quasi-stationary States of Two-Dimensional Electron Plasma Trapped in Magnetic Field

We have performed numerical simulations on a pure electron plasma system under a strong magnetic field, in order to examine quasi-stationary states that the system eventually evolves into. We use ring states as the initial states, changing the width, and find that the system evolves into a vortex crystal state from a thinner-ring state while a state with a single-peaked density distribution is obtained from a thicker-ring initial state. For those quasi-stationary states, density distribution and macroscopic observables are defined on the basis of a coarse-grained density field. We compare our results with experiments and some statistical theories, which include the Gibbs-Boltzmann statistics, Tsallis statistics, the fluid entropy theory, and the minimum enstrophy state. From some of those initial states, we obtain the quasi-stationary states which are close to the minimum enstrophy state, but we also find that the quasi-stationary states depend upon initial states, even if the initial states have the same energy and angular momentum, which means the ergodicity does not hold.Comment: 9 pages, 7 figure