Aspects of soil acidity and their effect on plant growth

The effects of low pH, AI, organic and phenolic acids on the growth of naturally occurring plant species were determined. The amelioration of Al toxicity by Si and organic acids was also investigated. Plants were grown from seeds in nutrient solutions simulating the ionic composition of soil solutions from five soil types ranging from acidic peat to calcareous soil. Soil solutions were extracted and analysed using centrifugation, with and without an immiscible displacent (1,1, I-trichloroethane), at both low (4000 rpm) and high speed (12000 rpm). Races of Holcus lanatus L. and Betula pendula Roth. from acidic soils (FM and SMM) grew better in low pH solutions (pH< 4.0). In acid-sensitive races Ca absorption was inhibited at low pH. Races of B.pendula from strongly to moderately acidic soils (FM, SMM, KP) were AI-tolerant and effectively excluded Al from shoots. Root elongation and leaf expansion were inhibited by all Al concentrations in races from calcareous soils (KR). Low concentrations of Al stimulated growth in some races of B.pendula (2 and 5 mg Al lˉ¹) and Anthoxanthum odoratum L. (1.3 and 2.7 mg Al lˉ¹). Al (25 and 35 mg lˉ¹) inhibited root and shoot growth in H.lanatus. Si (1500 and 2500 µM Si(OH)₄) addition to nutrient solutions alleviated AI-damage and restored nutrient uptake to values similar to those in plants grown with neither Al or Si. The ameliorative effects of Si were possibly achieved through AI/Si co-deposition in the root cell walls and maintenance of Golgi activity. Si at 1500 µM was beneficial but inhibited growth at 2500 µM. Al and hydroxyaluminosilicates at pH 5.6 were not toxic. Formic and tartaric acid ameliorated Al toxicity by reducing its availability. These organic acids on their own stimulated growth in H.lanatus and Deschampsia flexuosa (L.) Trin. Phenolic acids stimulated growth of H.lanatus in acidic solutions (pH 4.0) but not near-neutral solutions, particularly in races from soils high in phenolics. Addition of plant residue to acidic peats increased the growth of races from calcareous and acidic mineral soils

State of the climate in 2018

In 2018, the dominant greenhouse gases released into Earth’s atmosphere—carbon dioxide, methane, and nitrous oxide—continued their increase. The annual global average carbon dioxide concentration at Earth’s surface was 407.4 ± 0.1 ppm, the highest in the modern instrumental record and in ice core records dating back 800 000 years. Combined, greenhouse gases and several halogenated gases contribute just over 3 W m−2 to radiative forcing and represent a nearly 43% increase since 1990. Carbon dioxide is responsible for about 65% of this radiative forcing. With a weak La Niña in early 2018 transitioning to a weak El Niño by the year’s end, the global surface (land and ocean) temperature was the fourth highest on record, with only 2015 through 2017 being warmer. Several European countries reported record high annual temperatures. There were also more high, and fewer low, temperature extremes than in nearly all of the 68-year extremes record. Madagascar recorded a record daily temperature of 40.5°C in Morondava in March, while South Korea set its record high of 41.0°C in August in Hongcheon. Nawabshah, Pakistan, recorded its highest temperature of 50.2°C, which may be a new daily world record for April. Globally, the annual lower troposphere temperature was third to seventh highest, depending on the dataset analyzed. The lower stratospheric temperature was approximately fifth lowest. The 2018 Arctic land surface temperature was 1.2°C above the 1981–2010 average, tying for third highest in the 118-year record, following 2016 and 2017. June’s Arctic snow cover extent was almost half of what it was 35 years ago. Across Greenland, however, regional summer temperatures were generally below or near average. Additionally, a satellite survey of 47 glaciers in Greenland indicated a net increase in area for the first time since records began in 1999. Increasing permafrost temperatures were reported at most observation sites in the Arctic, with the overall increase of 0.1°–0.2°C between 2017 and 2018 being comparable to the highest rate of warming ever observed in the region. On 17 March, Arctic sea ice extent marked the second smallest annual maximum in the 38-year record, larger than only 2017. The minimum extent in 2018 was reached on 19 September and again on 23 September, tying 2008 and 2010 for the sixth lowest extent on record. The 23 September date tied 1997 as the latest sea ice minimum date on record. First-year ice now dominates the ice cover, comprising 77% of the March 2018 ice pack compared to 55% during the 1980s. Because thinner, younger ice is more vulnerable to melting out in summer, this shift in sea ice age has contributed to the decreasing trend in minimum ice extent. Regionally, Bering Sea ice extent was at record lows for almost the entire 2017/18 ice season. For the Antarctic continent as a whole, 2018 was warmer than average. On the highest points of the Antarctic Plateau, the automatic weather station Relay (74°S) broke or tied six monthly temperature records throughout the year, with August breaking its record by nearly 8°C. However, cool conditions in the western Bellingshausen Sea and Amundsen Sea sector contributed to a low melt season overall for 2017/18. High SSTs contributed to low summer sea ice extent in the Ross and Weddell Seas in 2018, underpinning the second lowest Antarctic summer minimum sea ice extent on record. Despite conducive conditions for its formation, the ozone hole at its maximum extent in September was near the 2000–18 mean, likely due to an ongoing slow decline in stratospheric chlorine monoxide concentration. Across the oceans, globally averaged SST decreased slightly since the record El Niño year of 2016 but was still far above the climatological mean. On average, SST is increasing at a rate of 0.10° ± 0.01°C decade−1 since 1950. The warming appeared largest in the tropical Indian Ocean and smallest in the North Pacific. The deeper ocean continues to warm year after year. For the seventh consecutive year, global annual mean sea level became the highest in the 26-year record, rising to 81 mm above the 1993 average. As anticipated in a warming climate, the hydrological cycle over the ocean is accelerating: dry regions are becoming drier and wet regions rainier. Closer to the equator, 95 named tropical storms were observed during 2018, well above the 1981–2010 average of 82. Eleven tropical cyclones reached Saffir–Simpson scale Category 5 intensity. North Atlantic Major Hurricane Michael’s landfall intensity of 140 kt was the fourth strongest for any continental U.S. hurricane landfall in the 168-year record. Michael caused more than 30 fatalities and $25 billion (U.S. dollars) in damages. In the western North Pacific, Super Typhoon Mangkhut led to 160 fatalities and$6 billion (U.S. dollars) in damages across the Philippines, Hong Kong, Macau, mainland China, Guam, and the Northern Mariana Islands. Tropical Storm Son-Tinh was responsible for 170 fatalities in Vietnam and Laos. Nearly all the islands of Micronesia experienced at least moderate impacts from various tropical cyclones. Across land, many areas around the globe received copious precipitation, notable at different time scales. Rodrigues and Réunion Island near southern Africa each reported their third wettest year on record. In Hawaii, 1262 mm precipitation at Waipā Gardens (Kauai) on 14–15 April set a new U.S. record for 24-h precipitation. In Brazil, the city of Belo Horizonte received nearly 75 mm of rain in just 20 minutes, nearly half its monthly average. Globally, fire activity during 2018 was the lowest since the start of the record in 1997, with a combined burned area of about 500 million hectares. This reinforced the long-term downward trend in fire emissions driven by changes in land use in frequently burning savannas. However, wildfires burned 3.5 million hectares across the United States, well above the 2000–10 average of 2.7 million hectares. Combined, U.S. wildfire damages for the 2017 and 2018 wildfire seasons exceeded $40 billion (U.S. dollars)

Finishing the euchromatic sequence of the human genome

The sequence of the human genome encodes the genetic instructions for human physiology, as well as rich information about human evolution. In 2001, the International Human Genome Sequencing Consortium reported a draft sequence of the euchromatic portion of the human genome. Since then, the international collaboration has worked to convert this draft into a genome sequence with high accuracy and nearly complete coverage. Here, we report the result of this finishing process. The current genome sequence (Build 35) contains 2.85 billion nucleotides interrupted by only 341 gaps. It covers ∼99% of the euchromatic genome and is accurate to an error rate of ∼1 event per 100,000 bases. Many of the remaining euchromatic gaps are associated with segmental duplications and will require focused work with new methods. The near-complete sequence, the first for a vertebrate, greatly improves the precision of biological analyses of the human genome including studies of gene number, birth and death. Notably, the human enome seems to encode only 20,000-25,000 protein-coding genes. The genome sequence reported here should serve as a firm foundation for biomedical research in the decades ahead

Application of nickel hyperaccumulating plants in natural phytoextraction: the Alyssum L. genus

Las plantas metalofitas han desarrollado mecanismos biológicos que les permiten sobrevivir en suelos ricos en metales, tanto naturales (suelos serpentiníticos o ultramáficos) como antropogénicos. La mayoría consigue su tolerancia restringiendo fisiológicamente la entrada de metales a las raíces y/o el transporte hacia las hojas. Algunas especies, sin embargo, presentan mecanismos extremadamente especializados que les permiten acumular o "hiperacumular" metales (como Cd, Co, Ni y Zn) en sus hojas, hasta alcanzar concentraciones superiores al 2% de su materia seca: son las denominadas "plantas hiperacumuladoras". Las hiperacumuladoras de Ni son mucho más numerosas que las de otros metales. La mayoría de ellas pertenecen a la familia Brasicaceae, siendo Alyssum L. uno de los géneros más representados. La fitoextracción utiliza estas plantas para extraer los metales del suelo y acumularlos en la biomasa aérea. Tras su cosecha, los restos vegetales pueden ser reciclados o confinados de una forma poco costosa, lo que constituye una estrategia económica para la limpieza de suelos contaminados. Una importante limitación de la aplicación práctica de la mayoría de las especies hiperacumuladoras en la fitoextracción es su reducido tamaño y escasa biomasa. Optimizar las prácticas de manejo del suelo y la cosecha, con el objeto de incrementar su productividad y la concentración de metales en la biomasa, así como cultivar especies hiperacumuladoras mejoradas, podría ser, por tanto, una combinación clave en el desarrollo último de esta técnica.Metallophytes have evolved biological mechanisms allowing them to survive on metal-rich soils, either of natural (serpentine or ultramafic soils) or anthropogenic origin. Most metallophytes achieve tolerance by physiologically restricting the entry of metals into the root and/or transport to the shoot. A few species, however, have extremely specialized mechanisms enabling them to accumulate, and even "hyperaccumulate" metals (such as Cd, Co, Ni and Zn) in their shoots at concentrations that can exceed 2% of their dry weight: the so-called "hyperaccumulators". There are many more hyperaccumulators of Ni than of any other metal; a vast number are members of the Brassicaceae family, of which most are represented within the genus Alyssum L. Phytoextraction employs these plants to extract soil metals into plant shoots for recycling and less expensive disposal, offering an economic strategy to decontaminate polluted soils. One challenge of adapting hyperaccumulators to practical phytoextraction is the small size and biomass of many of these species. Optimizing soil management practices to increase plant biomass and metal accumulation, and the development of plant breeding programmes for improved hyperaccumulator cultivars, will be crucial in the development of this technique

Diversity and Role of Endophytic and Rhizosphere Microbes Associated with Hyperaccumulator Plants During Metal Accumulation

Phytomining can be limited by low biomass productivity by plants or limited availability of soil metals. Ongoing research attempts to overcome these potential constraints and to make phytomining a successful commercial technique in the recovery of metals from polluted or naturally metal-rich soil by (hyper) accumulating plants. Recently, the benefits of combining phytoremediation with bioremediation, which uses beneficial microorganisms such as endophytic or rhizosphere bacteria and fungi for metal removal from soils, have been demonstrated. Metal-resistant microorganisms play an important role in enhancing plant survival and growth in these soils by alleviating metal toxicity and supplying nutrients. Furthermore, these beneficial microorganisms are able to enhance metal bioavailability in the rhizosphere of plants. An increase in plant growth and metal uptake increases the effectiveness of phytoremediation processes coupled with bioremediation. Here, we discuss how abiotic factors, such as the presence of metals in polluted sites or in naturally metal-rich (ultramafic) soils modulate activities of soil microbial communities. Then we introduce the concept of microbe-assisted phytomining and underline the role of plant-associated microorganisms in metal bioavailability and uptake by host plants that has attracted growing interest over the last decade. Finally, we present various techniques, including phenotypic, genotypic, and metagenomic approaches, which allow for characterizing soil microbial community structure and diversity and endophytic community in polluted or naturally metal-rich soils.Peer reviewe

Impact of rhizobacterial inoculants on plant growth and enzyme activities in soil treated with contaminated bottom sediments

The impact of contaminated bottom sediments on plant growth and soil enzyme activities was evaluated in a greenhouse pot study. The sediments were moderately contaminated with zinc and heavily contaminated with polycyclic aromatic hydrocarbons and polychlorinated dibenzo-p-dioxins and furans. The sediments were mixed with soil and planted with either Festuca arundinacea or Tagetes patula. The capacity of two rhizobacterial strains (Massilia niastensis P87 and Streptomyces costaricanus RP92), previously isolated from contaminated soils, to improve plant growth under the chemical stress was tested. Application of sediments to soil was severely phytotoxic to T. patula and mildly to F. arundinacea. On the other hand, the addition of sediments enhanced the soil enzymatic activity. Inoculation with both bacterial strains significantly increased shoot (up to 2.4-fold) and root (up to 3.4-fold) biomass of T. patula. The study revealed that the selected plant growth-promoting bacterial strains were able to alleviate phytotoxicity of bottom sediments to T. patula resulting from the complex character of the contamination

Effect of plant root exudates on the desorption of hexachlorocyclohexane isomers from contaminated soils

Plants and their associated microbiota can have a significant impact on the behaviour of soil contaminants. Particularly, root exudation is one of the most important plant-associated processes in this respect, as it may have a substantial effect on the bioavailability of soil contaminants, specially of hydrophobic contaminants strongly sorbed by soil. The aim of the present study was to evaluate the effect of root exudates (natural and artificial) on the desorption of α-, β-, δ- and γ-isomers of hexachlorocyclohexane (HCH) from contaminated soil, using batch experiments. Natural root exudates were obtained from Holcus lanatus plants growing in the same (contaminated) area. Fifteen compounds (mainly organic acids and phenolic compounds) usually found in root exudates were also tested, individually or as mixtures (1 and 10 mM). Both natural and artificial exudates favoured the mobilization of sorbed HCH in soil. The effect was highly significant for α-, β- and γ-HCH isomers, for which the desorption rates increased by 23.0, 26.8 and 15.5% in the presence of natural root exudates and by 40.1, 25.9 and 25.6% in the presence of the artificial mixture (at 10 mM). The δ-HCH desorption rates increased by less than 10%. The effect of individual exudate components was very variable, but increased with the carbon content, reflecting the significance of hydrophobic interactions between the exudates and HCH molecules in the desorption of these last from soil. These findings indicate that plants may significantly influence the bioavailability of persistent contaminants, with major implications for improving phyto- and bioremediation procedures.Dr Balseiro-Romero was in receipt of a postdoctoral fellowship(Programa de axudas á etapa posdoutoral; ED481B 2017/073) by the Consellería de Cultura, Educación e Ordenación Universitaria(Xunta de Galicia, Spain). M. Balseiro-Romero and C. Monterrosobelong to the Galician Competitive Research Group GRC-ED431C2018/12 and to the CRETUS Strategic Partnership (ED431E 2018/01). All of these programmes are co-funded by ERDF (UE)

Editorial: Searching for Solutions to Soil Pollution: Underlying Soil-Contaminant Interactions and Development of Innovative Land Remediation and Reclamation Techniques

5 páginas.- 1 figura.- 24 referenciasSoils are complex and dynamic systems that perform essential functions contributing to the sustainability of terrestrial ecosystems and the support of life. They participate in a wide variety of ecosystem functions/services (e.g., Baveye et al., 2016), including those related to the production of biomass, the regulation of carbon and nutrient cycles, and the regulation of water resources and air quality, due to their filtering and buffering capacity.Peer reviewe

Enhanced biodegradation of hexachlorocyclohexane (HCH) isomers by Sphingobium sp. strain D4 in the presence of root exudates or in co-culture with HCH-mobilizing strains

Lindane and other 1,2,3,4,5,6-hexachlorocyclohexane (HCH) isomers are persistent organic pollutants highly hydrophobic, which hampers their availability and biodegradation. This work aimed at (i) investigating genes encoding enzymes involved in HCH degradation in the bacterium Sphingobium sp. D4, (ii) selecting strains, from a collection of environmental isolates, able to mobilize HCHs from contaminated soil, and (iii) analysing the biodegradation of HCHs by strain D4 in co-culture with HCH-mobilizing strains or when cultivated with root exudates. Fragments of the same size and similar sequence to linA and linB genes were successfully amplified. Two isolates, Streptomyces sp. M7 and Rhodococcus erythropolis ET54b able to produce emulsifiers and to mobilize HCH isomers from soil were selected. Biodegradation of HCH isomers by strain D4 was enhanced when co-inoculated with HCH mobilizing strains or when cultivated with root exudates. The degrader strain D4 was able to decompose very efficiently HCHs isomers, reducing their concentration in soil slurries by more than 95% (from an average initial amount of 50 ± 8 mg HCH kg−1 soil) in 9 days. The combination of HCH-degrading and HCH-mobilizing strains can be considered a promising inoculum for future soil bioremediation studies using bioaugmentation techniques or in combination with plants in rhizodegradation assays.Fil: Alvarez, Analia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; ArgentinaFil: Rodriguez Garrido, Beatriz. Consejo Superior de Investigaciones Científicas. Instituto de Investigaciones Agrobiológicas de Galicia; EspañaFil: Cerdeira Perez, Andrea. Consejo Superior de Investigaciones Científicas. Instituto de Investigaciones Agrobiológicas de Galicia; EspañaFil: Tomé Pérez, Alba. Consejo Superior de Investigaciones Científicas. Instituto de Investigaciones Agrobiológicas de Galicia; EspañaFil: Kidd, Petra Susan. Consejo Superior de Investigaciones Científicas. Instituto de Investigaciones Agrobiológicas de Galicia; EspañaFil: Prieto Fernández, Angeles. Consejo Superior de Investigaciones Científicas. Instituto de Investigaciones Agrobiológicas de Galicia; Españ

The Influence of Bottom Sediments and Inoculation with Rhizobacterial Inoculants on the Physiological State of Plants Used in Urban Plantings

Bottom sediments accumulate rapidly in urban reservoirs and should be periodically removed. Their high organic matter content makes them valuable fertilizers, but they often contain toxic substances. The present study compares the responses of the dicotyledonous Tagetes patula and monocotyledon Festuca arundinacea to the presence of such sediments in soil and to soil inoculation with two rhizobacterial strains (Massilia niastensis p87 and Streptomyces costaricanus RP92) isolated from contaminated soil. Total soluble protein, total chlorophyll content, as well as chlorophyll a/b ratio, degree of lipid peroxidation (TBARS), α-tocopherol content, total phenolic compounds (TPC) content and anthocyanins content were examined in the leaves of investigated plants. T. patula was more sensitive to the toxic substances in the sediments than F. arundinacea. Rhizobacterial inoculation reduced the toxic effect of the sediment. RP92 has a more favorable effect on the condition of T. patula than p87. F. arundinacea was not adversely affected by the addition of sediments or inoculation with the p87 or RP92 strains. Both tested plant species are suitable for planting on soils enriched with urban sediments, and the addition of bacterial inoculums promote plant growth and reduce the damage caused by the xenobiotics contained in the sediments.This research was supported by the European Commission under the Seventh Framework Program for Research (FP7-KBBE-266124, Greenland) and University of Lodz Grant No. B17 11 000 000 052.01.Peer reviewe