Galaxy Morphologies Revealed with Subaru HSC and Super-Resolution Techniques II: Environmental Dependence of Galaxy Mergers at z~2-5

We super-resolve the seeing-limited Subaru Hyper Suprime-Cam (HSC) images for 32,187 galaxies at z~2-5 in three techniques, namely, the classical Richardson-Lucy (RL) point spread function (PSF) deconvolution, sparse modeling, and generative adversarial networks to investigate the environmental dependence of galaxy mergers. These three techniques generate overall similar high spatial resolution images but with some slight differences in galaxy structures, for example, more residual noises are seen in the classical RL PSF deconvolution. To alleviate disadvantages of each technique, we create combined images by averaging over the three types of super-resolution images, which result in galaxy sub-structures resembling those seen in the Hubble Space Telescope images. Using the combined super-resolution images, we measure the relative galaxy major merger fraction corrected for the chance projection effect, f_merg, for galaxies in the ~300 deg^2-area data of the HSC Strategic Survey Program and the CFHT Large Area U-band Survey. Our f_merg measurements at z~3 validate previous findings showing that f_merg is higher in regions with a higher galaxy overdensity delta at z~2-3. Thanks to the large galaxy sample, we identify a nearly linear increase in f_merg with increasing delta at z~4-5, providing the highest-z observational evidence that galaxy mergers are related to delta. In addition to our f_merg measurements, we find that the galaxy merger fractions in the literature also broadly align with the linear f_merg-delta relation across a wide redshift range of z~2-5. This alignment suggests that the linear f_merg-delta relation can serve as a valuable tool for quantitatively estimating the contributions of galaxy mergers to various environmental dependences. This super-resolution analysis can be readily applied to datasets from wide field-of-view space telescopes such as Euclid and Roman.Comment: 29 pages, 13 figures, 6 tables. Submitted to PASJ. Comments welcom

PPAR beta/delta activation of CD300a controls intestinal immunity

Macrophages are important for maintaining intestinal immune homeostasis. Here, we show that PPAR beta/delta (peroxisome proliferator-activated receptor beta/delta) directly regulates CD300a in macrophages that express the immunoreceptor tyrosine based-inhibitory motif (ITIM)-containing receptor. In mice lacking CD300a, high-fat diet (HFD) causes chronic intestinal inflammation with low numbers of intestinal lymph capillaries and dramatically expanded mesenteric lymph nodes. As a result, these mice exhibit triglyceride malabsorption and reduced body weight gain on HFD. Peritoneal macrophages from Cd300a(-/-) mice on HFD are classically M1 activated. Activation of toll-like receptor 4 (TLR4)/MyD88 signaling by lipopolysaccharide (LPS) results in prolonged IL-6 secretion in Cd300a(-/-) macrophages. Bone marrow transplantation confirmed that the phenotype originates from CD300a deficiency in leucocytes. These results identify CD300a-mediated inhibitory signaling in macrophages as a critical regulator of intestinal immune homeostasis

The whole blood transcriptional regulation landscape in 465 COVID-19 infected samples from Japan COVID-19 Task Force

「コロナ制圧タスクフォース」COVID-19患者由来の血液細胞における遺伝子発現の網羅的解析 --重症度に応じた遺伝子発現の変化には、ヒトゲノム配列の個人差が影響する--. 京都大学プレスリリース. 2022-08-23.Coronavirus disease 2019 (COVID-19) is a recently-emerged infectious disease that has caused millions of deaths, where comprehensive understanding of disease mechanisms is still unestablished. In particular, studies of gene expression dynamics and regulation landscape in COVID-19 infected individuals are limited. Here, we report on a thorough analysis of whole blood RNA-seq data from 465 genotyped samples from the Japan COVID-19 Task Force, including 359 severe and 106 non-severe COVID-19 cases. We discover 1169 putative causal expression quantitative trait loci (eQTLs) including 34 possible colocalizations with biobank fine-mapping results of hematopoietic traits in a Japanese population, 1549 putative causal splice QTLs (sQTLs; e.g. two independent sQTLs at TOR1AIP1), as well as biologically interpretable trans-eQTL examples (e.g., REST and STING1), all fine-mapped at single variant resolution. We perform differential gene expression analysis to elucidate 198 genes with increased expression in severe COVID-19 cases and enriched for innate immune-related functions. Finally, we evaluate the limited but non-zero effect of COVID-19 phenotype on eQTL discovery, and highlight the presence of COVID-19 severity-interaction eQTLs (ieQTLs; e.g., CLEC4C and MYBL2). Our study provides a comprehensive catalog of whole blood regulatory variants in Japanese, as well as a reference for transcriptional landscapes in response to COVID-19 infection

DOCK2 is involved in the host genetics and biology of severe COVID-19

「コロナ制圧タスクフォース」COVID-19疾患感受性遺伝子DOCK2の重症化機序を解明 --アジア最大のバイオレポジトリーでCOVID-19の治療標的を発見--. 京都大学プレスリリース. 2022-08-10.Identifying the host genetic factors underlying severe COVID-19 is an emerging challenge. Here we conducted a genome-wide association study (GWAS) involving 2, 393 cases of COVID-19 in a cohort of Japanese individuals collected during the initial waves of the pandemic, with 3, 289 unaffected controls. We identified a variant on chromosome 5 at 5q35 (rs60200309-A), close to the dedicator of cytokinesis 2 gene (DOCK2), which was associated with severe COVID-19 in patients less than 65 years of age. This risk allele was prevalent in East Asian individuals but rare in Europeans, highlighting the value of genome-wide association studies in non-European populations. RNA-sequencing analysis of 473 bulk peripheral blood samples identified decreased expression of DOCK2 associated with the risk allele in these younger patients. DOCK2 expression was suppressed in patients with severe cases of COVID-19. Single-cell RNA-sequencing analysis (n = 61 individuals) identified cell-type-specific downregulation of DOCK2 and a COVID-19-specific decreasing effect of the risk allele on DOCK2 expression in non-classical monocytes. Immunohistochemistry of lung specimens from patients with severe COVID-19 pneumonia showed suppressed DOCK2 expression. Moreover, inhibition of DOCK2 function with CPYPP increased the severity of pneumonia in a Syrian hamster model of SARS-CoV-2 infection, characterized by weight loss, lung oedema, enhanced viral loads, impaired macrophage recruitment and dysregulated type I interferon responses. We conclude that DOCK2 has an important role in the host immune response to SARS-CoV-2 infection and the development of severe COVID-19, and could be further explored as a potential biomarker and/or therapeutic target

Adsorption of ionomer and ionic liquid on model Pt catalysts for polymer electrolyte fuel cells

Abstract The adsorption of the perfluoro‐sulfonic acid polymer of Nafion and ionic liquid (IL) of 1‐butyl‐3‐methylimidazolium bis(trifluoromethanesulfonyl)imide on the surface of Pt was investigated via voltammetric analyses, using stepped Pt single‐crystal electrodes with (111) terraces and (110) steps, and surface‐enhanced infrared absorption spectroscopy (SEIRAS) analyses using a Pt polycrystalline electrode. Sulfonate anion in Nafion was adsorbed on the stepped Pt single‐crystal electrodes and suppressed the oxygen reduction reaction (ORR) activity by more than 50%, regardless of the terrace width. The IL molecules were preferentially adsorbed on the step sites through a simple IL coating procedure. The SEIRAS analysis indicated that the IL molecules were stable on the Pt surface throughout potential cycles, where the anionic moieties were in contact with the Pt surface and reoriented depending on the potential. The IL modification prior to Nafion coating mitigated ionomer adsorption on the Pt surface. However, the mitigation effect was not reflected in the ORR activity because water production led to IL desorption during the ORR activity measurement. Accordingly, IL modification is a promising method for improving the performance of Pt catalysts in polymer electrolyte fuel cells; however, further studies to prevent the leaching of IL are required for practical applications of this approach

Can Persistent Homology Features Capture More Intrinsic Information about Tumors from ¹⁸F-Fluorodeoxyglucose Positron Emission Tomography/Computed Tomography Images of Head and Neck Cancer Patients?

This study hypothesized that persistent homology (PH) features could capture more intrinsic information about the metabolism and morphology of tumors from 18F-fluorodeoxyglucose positron emission tomography (PET)/computed tomography (CT) images of patients with head and neck (HN) cancer than other conventional features. PET/CT images and clinical variables of 207 patients were selected from the publicly available dataset of the Cancer Imaging Archive. PH images were generated from persistent diagrams obtained from PET/CT images. The PH features were derived from the PH PET/CT images. The signatures were constructed in a training cohort from features from CT, PET, PH-CT, and PH-PET images; clinical variables; and the combination of features and clinical variables. Signatures were evaluated using statistically significant differences (p-value, log-rank test) between survival curves for low- and high-risk groups and the C-index. In an independent test cohort, the signature consisting of PH-PET features and clinical variables exhibited the lowest log-rank p-value of 3.30 × 10−5 and C-index of 0.80, compared with log-rank p-values from 3.52 × 10−2 to 1.15 × 10−4 and C-indices from 0.34 to 0.79 for other signatures. This result suggests that PH features can capture the intrinsic information of tumors and predict prognosis in patients with HN cancer

Monovalent Germanium Radical Stabilized by a Phenalenyl Scaffold

A monovalent (Non-Gomberg type) germanium radical 1 stabilized by phenalenyl-based bidentate ligand was synthe-sized. Because of the high thermal stability originating from spin delocalization over the phenalenyl moiety, it was possi-ble to isolate compound 1 in crystalline form by sublimation at ca. 300 °C. ESR spectra, crystallographic analysis, theo-retical calculations, and reactivities with carbon radicals suggest that the spin of 1 is distributed on the phenalenyl moie-ty, while 1 behaves as a germanium-centered radical in its reactions with C2Cl6, PhSSPh, and p-benzoquinone to form Ge−E (E = Cl, S, O) bonds