An evaluation of the effects of blue crab (Callinectes sapidus) behavior on the efficacy of crab pots as a tool for estimating population abundance

Crab traps have been used extensively in studies on the population dynamics of blue crabs to provide estimates of catch per unit of effort; however, these estimates have been determined without adequate consideration of escape rates. We examined the ability of the blue crab (Callinectes sapidus) to escape crab pots and the possibility that intraspecific crab interactions have an effect on catch rates. Approximately 85% of crabs that entered a pot escaped, and 83% of crabs escaped from the bait chamber (kitchen). Blue crabs exhibited few aggressive behavioral interactions in and around the crab pot and were documented to move freely in and out of the pot. Both the mean number and size of crabs caught were significantly smaller at deeper depths. Results from this study show that current estimates of catch per unit of effort may be biased given the high escape rate of blue crabs documented in this study. The results of this paper provide a mechanistic view of trap efficacy, and reveal crab behavior in and around commercial crab pots

Local structure of liquid carbon controls diamond nucleation

Diamonds melt at temperatures above 4000 K. There are no measurements of the steady-state rate of the reverse process: diamond nucleation from the melt, because experiments are difficult at these extreme temperatures and pressures. Using numerical simulations, we estimate the diamond nucleation rate and find that it increases by many orders of magnitude when the pressure is increased at constant supersaturation. The reason is that an increase in pressure changes the local coordination of carbon atoms from three-fold to four-fold. It turns out to be much easier to nucleate diamond in a four-fold coordinated liquid than in a liquid with three-fold coordination, because in the latter case the free-energy cost to create a diamond-liquid interface is higher. We speculate that this mechanism for nucleation control is relevant for crystallization in many network-forming liquids. On the basis of our calculations, we conclude that homogeneous diamond nucleation is likely in carbon-rich stars and unlikely in gaseous planets

How Do Quasicrystals Grow?

Using molecular simulations, we show that the aperiodic growth of quasicrystals is controlled by the ability of the growing quasicrystal `nucleus' to incorporate kinetically trapped atoms into the solid phase with minimal rearrangement. In the system under investigation, which forms a dodecagonal quasicrystal, we show that this process occurs through the assimilation of stable icosahedral clusters by the growing quasicrystal. Our results demonstrate how local atomic interactions give rise to the long-range aperiodicity of quasicrystals.Comment: 4 pages, 4 figures. Figures and text have been updated to the final version of the articl

Detection of hidden structures on all scales in amorphous materials and complex physical systems: basic notions and applications to networks, lattice systems, and glasses

Recent decades have seen the discovery of numerous complex materials. At the root of the complexity underlying many of these materials lies a large number of possible contending atomic- and larger-scale configurations and the intricate correlations between their constituents. For a detailed understanding, there is a need for tools that enable the detection of pertinent structures on all spatial and temporal scales. Towards this end, we suggest a new method by invoking ideas from network analysis and information theory. Our method efficiently identifies basic unit cells and topological defects in systems with low disorder and may analyze general amorphous structures to identify candidate natural structures where a clear definition of order is lacking. This general unbiased detection of physical structure does not require a guess as to which of the system properties should be deemed as important and may constitute a natural point of departure for further analysis. The method applies to both static and dynamic systems.Comment: (23 pages, 9 figures

Deviations from Arrhenius dynamics in high temperature liquids, a possible collapse, and a viscosity bound

Liquids realize a highly complex state of matter in which strong competing kinetic and interaction effects come to life. As such, liquids are, generally, more challenging to understand than either gases or solids. In weakly interacting gases, the kinetic effects dominate. By contrast, low temperature solids typically feature far smaller fluctuations about their ground state. Notwithstanding their complexity, with the exception of quantum fluids (e.g., superfluid helium) and supercooled liquids (including glasses), various aspects of common liquid dynamics such as their dynamic viscosity are often assumed to be given by rather simple, Arrhenius-type, activated forms with nearly constant (i.e., temperature independent) energy barriers. In this paper, we analyze experimentally measured viscosities of numerous liquids far above their equilibrium melting temperature to see how well this assumption fares. We find, for the investigated liquids, marked deviations from simple activated dynamics. Even far above their equilibrium melting temperatures, as the temperature drops, the viscosity of these liquids increases more strongly than predicted by activated dynamics dominated by a single uniform energy barrier. For metallic fluids, the scale of the prefactors of the best Arrhenius fits for the viscosity is typically consistent with that given by the product (nh) with n the number density and h Planck's constant. More generally, in various fluids (whether metallic or nonmetallic) that we examined, (nh) constitutes a lower bound scale on the viscosity. We find that a scaling of the temperature axis (complementing that of the viscosity) leads to a partial collapse of the temperature dependent viscosities of different fluids; such a scaling allows for a functional dependence of the viscosity on temperature that includes yet is far more general than activated Arrhenius form alone. We speculate on relations between non-Arrhenius dynamics and thermodynamic observables

Effect of Pt Doping on Nucleation and Crystallization in Li2O.2SiO2 Glass: Experimental Measurements and Computer Modeling

Heterogeneous nucleation and its effects on the crystallization of lithium disilicate glass containing small amounts of Pt are investigated. Measurements of the nucleation frequencies and induction times with and without Pt are shown to be consistent with predictions based on the classical nucleation theory. A realistic computer model for the transformation is presented. Computed differential thermal analysis data (such as crystallization rates as a function of time and temperature) are shown to be in good agreement with experimental results. This modeling provides a new, more quantitative method for analyzing calorimetric data

Atomistic structure of amorphous silicon nitride from classical molecular dynamics simulations

By means of molecular dynamics simulations based on the Billeter et al. [S. R. Billeter, A. Curioni, D. Fischer, and W. Andreoni, Phys. Rev. B {\bf 73}, 155329] environment-dependent classical force field we studied the structural features of SiN$_x$ samples at various stoichiometries. Our results are in good agreement with experimental data and are able to reproduce some features which so far were not reproduced by simulations. In particular, we identified units containing N--N bonds, which are thought to be responsible for an unassigned peak in the radial distribution function obtained from neutron diffraction data and signals observed in electron spin resonance, X-ray photoemission spectroscopy, electron-energy-loss spectroscopy and optical absorption experiments. We have identified defects which are thought to be the responsible for the high concentration of charge traps that makes this material suitable for building non-volatile memory devices. We analyzed the dependency of the concentration of these defects with the stoichiometry of the sample

Phase field theory of interfaces and crystal nucleation in a eutectic system of fcc structure: I. Transitions in the one-phase liquid region

The published version of this Article can be accessed from the link below - Copyright @ 2007 American Institute of PhysicsThe phase field theory (PFT) has been applied to predict equilibrium interfacial properties and nucleation barrier in the binary eutectic system Ag-Cu using double well and interpolation functions deduced from a Ginzburg-Landau expansion that considers fcc (face centered cubic) crystal symmetries. The temperature and composition dependent free energies of the liquid and solid phases are taken from CALculation of PHAse Diagrams-type calculations. The model parameters of PFT are fixed so as to recover an interface thickness of approximately 1 nm from molecular dynamics simulations and the interfacial free energies from the experimental dihedral angles available for the pure components. A nontrivial temperature and composition dependence for the equilibrium interfacial free energy is observed. Mapping the possible nucleation pathways, we find that the Ag and Cu rich critical fluctuations compete against each other in the neighborhood of the eutectic composition. The Tolman length is positive and shows a maximum as a function of undercooling. The PFT predictions for the critical undercooling are found to be consistent with experimental results. These results support the view that heterogeneous nucleation took place in the undercooling experiments available at present. We also present calculations using the classical droplet model classical nucleation theory (CNT) and a phenomenological diffuse interface theory (DIT). While the predictions of the CNT with a purely entropic interfacial free energy underestimate the critical undercooling, the DIT results appear to be in a reasonable agreement with the PFT predictions.This work has been supported by the Hungarian Academy of Sciences under Contract No. OTKA-K-62588 and by the ESA PECS Contract Nos. 98005, 98021, and 98043