Pattern of multidrug resistant bacteria associated with intensive care unit infections in Ibadan, Nigeria

Background: Patients admitted into the intensive care unit (ICU) usually have impaired immunity and are therefore at high risk of acquiring hospital associated infections. Infections caused by multidrug resistant organisms now constitute a major problem, limiting the choice of antimicrobial therapy.Objectives: This study was aimed at determining the antimicrobial resistance pattern of pathogens causing ICU infections in University College Hospital (UCH), Ibadan, Nigeria. The aetiological agents, prevalence and types ICU infections were also determined.Methods: One year hospital associated infections surveillance was conducted in the ICU of UCH, Ibadan. Blood, urine, tracheal aspirate and wound biopsies specimens were collected under strict asepsis and sent to the Medical Microbiology laboratory of the same institution for immediate processing. All pathogens were isolated and identified by standard microbiological methods. Disk diffusion antibiotic susceptibility testing was performed and interpreted according to Clinical and Laboratory Standards Institute (CLSI) guidelines.Results: The overall prevalence of ICU infections was 30.9% out of which 12.9% were bloodstream infections, 31.5% urinary tract infections, 38.9% pneumonia, and 16.7% skin and soft tissue infections. Klebsiella species and Escherichia coli were the predominant pathogens. Multidrug resistant organisms constituted 59.3% of the pathogens, MDR Klebsiella spp and MDR E. coli were 70.8% and 71.4% respectively. Resistance to Cefuroxime was the highest (92.9%) while Meropenem had the least resistance (21.4%).Conclusion: There is a high prevalence of multidrug resistant bacteria causing ICU infections. Application of more stringent infection control procedures and institution of functional antimicrobial stewardship are recommended to combat this problem.Keywords: Healthcare associated infections, Infection control, Antibiotic resistance, Intensive care uni

Species Composition and Plasmodium falciparum Infection Rates of Anopheles gambiae s.l. Mosquitoes in Six Localities of Kwara State, North Central, Nigeria

Entomological data gathering is essential for monitoring malaria vector disease risks and selection of appropriate interventions for the protection of exposed human populations. This study assessed the relative abundance, species composition, and sporozoite infection rates of indoor resting An. gambiae s.l. malaria vectors in six communities across 3 Local Government Areas in Kwara State, Nigeria. Total number of mosquitoes collected by Pyrethrum Spray Catch method over a period of eighth months were correlated with rainfall values in the area. Plasmodium falciparum sporozoite infection rates and sibling species identification of collected An. gambiae s.l. mosquito samples were determined by ELISA and PCR respectively. Results showed a positive correlation (r = 0.639, p = 0.08) between rainfall and numbers of Anopheles mosquitoes in the study areas. The overall composition of the An. gambiae s.l sibling species in the collected samples from all the six communities showed the predominance of An. gambiae s.s 298 (75.3%) compared to An. coluzzii 94(23.7%) and An. arabiensis 4(1.0%). However, the sporozoite infection rate of An. coluzzii (22.3%) was higher compared to An. gambiae s.s (12.8%) and An. arabiensis (0%). Mean numbers of An. gambiae s.l mosquitoes were significantly higher in Ilorin west LGA compared to Asa (F = 17.81, P < 0.001) and Ilorin East LGAs (F = 22.81, P < 0.001). Sporozoite rates of both An. gambiae s.s and An. coluzzii sibling species were higher in Ilorin West communities (Aiyede 21%, Ogundele 32%) compared to Asa (Idi Emi 11.1%, Lasoju 5.1%) and Ilorin East (Oke Oyi 2.4%, Ote-efan 0%) communities. Prevalence of sporozoite-infected An. gambiae s.s and An. coluzzii indoors highlight the need for effective insecticide treated bed-nets interventions to protect the residents from malaria risks. Higher numbers of An. coluzzii in the swampy rice marshed Ilorin West LGA communities require larval source management as an additional strategy for effective malaria vector control

Large expert-curated database for benchmarking document similarity detection in biomedical literature search

Document recommendation systems for locating relevant literature have mostly relied on methods developed a decade ago. This is largely due to the lack of a large offline gold-standard benchmark of relevant documents that cover a variety of research fields such that newly developed literature search techniques can be compared, improved and translated into practice. To overcome this bottleneck, we have established the RElevant LIterature SearcH consortium consisting of more than 1500 scientists from 84 countries, who have collectively annotated the relevance of over 180 000 PubMed-listed articles with regard to their respective seed (input) article/s. The majority of annotations were contributed by highly experienced, original authors of the seed articles. The collected data cover 76% of all unique PubMed Medical Subject Headings descriptors. No systematic biases were observed across different experience levels, research fields or time spent on annotations. More importantly, annotations of the same document pairs contributed by different scientists were highly concordant. We further show that the three representative baseline methods used to generate recommended articles for evaluation (Okapi Best Matching 25, Term Frequency-Inverse Document Frequency and PubMed Related Articles) had similar overall performances. Additionally, we found that these methods each tend to produce distinct collections of recommended articles, suggesting that a hybrid method may be required to completely capture all relevant articles. The established database server located at https://relishdb.ict.griffith.edu.au is freely available for the downloading of annotation data and the blind testing of new methods. We expect that this benchmark will be useful for stimulating the development of new powerful techniques for title and title/abstract-based search engines for relevant articles in biomedical research.Peer reviewe

The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance

INTRODUCTION Investment in Africa over the past year with regard to severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) sequencing has led to a massive increase in the number of sequences, which, to date, exceeds 100,000 sequences generated to track the pandemic on the continent. These sequences have profoundly affected how public health officials in Africa have navigated the COVID-19 pandemic. RATIONALE We demonstrate how the first 100,000 SARS-CoV-2 sequences from Africa have helped monitor the epidemic on the continent, how genomic surveillance expanded over the course of the pandemic, and how we adapted our sequencing methods to deal with an evolving virus. Finally, we also examine how viral lineages have spread across the continent in a phylogeographic framework to gain insights into the underlying temporal and spatial transmission dynamics for several variants of concern (VOCs). RESULTS Our results indicate that the number of countries in Africa that can sequence the virus within their own borders is growing and that this is coupled with a shorter turnaround time from the time of sampling to sequence submission. Ongoing evolution necessitated the continual updating of primer sets, and, as a result, eight primer sets were designed in tandem with viral evolution and used to ensure effective sequencing of the virus. The pandemic unfolded through multiple waves of infection that were each driven by distinct genetic lineages, with B.1-like ancestral strains associated with the first pandemic wave of infections in 2020. Successive waves on the continent were fueled by different VOCs, with Alpha and Beta cocirculating in distinct spatial patterns during the second wave and Delta and Omicron affecting the whole continent during the third and fourth waves, respectively. Phylogeographic reconstruction points toward distinct differences in viral importation and exportation patterns associated with the Alpha, Beta, Delta, and Omicron variants and subvariants, when considering both Africa versus the rest of the world and viral dissemination within the continent. Our epidemiological and phylogenetic inferences therefore underscore the heterogeneous nature of the pandemic on the continent and highlight key insights and challenges, for instance, recognizing the limitations of low testing proportions. We also highlight the early warning capacity that genomic surveillance in Africa has had for the rest of the world with the detection of new lineages and variants, the most recent being the characterization of various Omicron subvariants. CONCLUSION Sustained investment for diagnostics and genomic surveillance in Africa is needed as the virus continues to evolve. This is important not only to help combat SARS-CoV-2 on the continent but also because it can be used as a platform to help address the many emerging and reemerging infectious disease threats in Africa. In particular, capacity building for local sequencing within countries or within the continent should be prioritized because this is generally associated with shorter turnaround times, providing the most benefit to local public health authorities tasked with pandemic response and mitigation and allowing for the fastest reaction to localized outbreaks. These investments are crucial for pandemic preparedness and response and will serve the health of the continent well into the 21st century

Assessment of Wildlife Hunting Activities in Ido Local Government Area, Oyo State Nigeria

The study was conducted to assess hunting activities in Ido Local Government Area, Oyo State, Nigeria. A well-structured questionnaire was administered to obtain information from fifty hunters using a simple random sampling technique. Data were analyzed using descriptive statistics. The result showed that 96% of hunters in the study area were men. Most of the respondents were married (84%) and within the age bracket of 31 and 50 years (48%). About 34% and 40% of respondents had primary and secondary education respectively while 13% had no formal education. They had between 20 and 29 years’ experience in wild animal hunting. Sixty-eight percent of the hunters in the study area engaged in part-time hunting while 32% were full-time hunters. The study further revealed that the hunters engaged in hunting for financial gain (64%), leisure (34%) and family tradition (38%). About ten types of species of wildlife animals were commonly killed by the hunters, and the animals were sold within the community market (42%), outside the community market (32%) and to visiting bushmeat marketers (26%). The study therefore recommends a policy that will control hunting activitiesin the study area, knowing that animal hunting serves as another source of livelihood to the hunters. Keywords: Hunters, wildlife, bushmeat, community market, occupatio

Seeds and seedlings vigour in tropical maize inbred lines

Seed and seedling vigour is an aspect of seed quality which affects field establishment and performance. Low maize yields have been reported  to be affected by several factors in which poor quality seed with low seed and seedling vigour. Information is scarce on seed and seedling vigour in maize inbred lines developed for tropical environments. Fifteen genotypes of tropical maize (Zea mays L.) inbred lines were evaluated to determine the level of differences in seed and seedling vigour traits, and extent of relationships among traits and their heritability. A substantial amount of genetic variability was found, which suggested that most of the traits under study could be improved through selection and utilized in breeding programs. Positive and signifi- cant interrelationship  among  seed germination  and seedling  traits  and  a positive  correlation  between  seed germination and seed vigour and field emergence showed that these could be given due consideration in crop improvement for seed and seedling vigour. High genotypic coefficient of variation, heritability and genetic advance were obtained for seed germination, seed emergence, shoot length and seedling vigour index I and II, revealing the possibility of improvement in these characters through direct selection. The principal component analysis (PCA) identified seed emergence, shoot length, seedling vigour index I and II and tetrazolium vigour as characters that contributed greatly to variation in seed vigour in the maize inbred lines. Cluster analysis partitioned the genotypes into two groups, with group I consisting of seven genotypes and group II comprised the other eight genotypes, which suggested that hybridization between the two groups could lead to high level of heterosis. Genotype V5  had superior seedling vigour traits compared to other genotypes. Seedling emer- gence, shoot length, seedling vigour index I, seedling vigour index II and tetrazolium vigour are effective characters for good seedling vigour traits in maize inbred lines investigated

Inhibition of lipid peroxidation and free radical scavenging activities of methanolic leaf extract of Psidium guajava

Objectives: Studies have linked the generation of free radicals with the incidence of degenerative diseases. Antioxidants from plant origin have been proved to play a major role in mitigating against free radicals-induced oxidative damage. This study aimed at assessing the in-vitro and in-vivo antioxidant capability of Psidium guajava leafMethods: The leaves were collected and extracted with 70% methanol. Total phenolic, and flavonoids contents, 2,2-diphenyl-1-picrylhydrazyl and Hydroxyl radicals scavenging activities, and inhibition of lipid peroxidation potential of the extract were assessed. Furthermore, rats (n=21) randomized into three groups were exposed to 50, 150, and 250 mg/kg body weight of the extract for 30 days. Control animals (n=7) received corn oil, after which blood and liver were excised for antioxidant assay.Results: The extract is rich in phenolic and flavonoid compounds. It scavenged DPPH and hydroxyl radicals and inhibits lipid peroxidation in-vitro. In-vivo, it increased the activities of hepatic superoxide dismutase, catalase, glutathione peroxidase, and plasma paraoxonase, and the concentration of hepatic reduced glutathione and MDA.Conclusion: Psidium guajava leaf extract is a potential source of natural antioxidant compounds, capable of supplementing the body's antioxidant defense system