Spt5 Cooperates with Human Immunodeficiency Virus Type 1 Tat by Preventing Premature RNA Release at Terminator Sequences

The human immunodeficiency virus type 1 (HIV-1) Tat protein activates transcription elongation by stimulating the Tat-activated kinase (TAK/p-TEFb), a protein kinase composed of CDK9 and its cyclin partner, cyclin T1. CDK9 is able to hyperphosphorylate the carboxyl-terminal domain (CTD) of the large subunit of RNA polymerase during elongation. In addition to TAK, the transcription elongation factor Spt5 is required for the efficient activation of transcriptional elongation by Tat. To study the role of Spt5 in HIV transcription in more detail, we have developed a three-stage Tat-dependent transcription assay that permits the isolation of active preinitiation complexes, early-stage elongation complexes, and Tat-activated elongation complexes. Spt5 is recruited in the transcription complex shortly after initiation. After recruitment of Tat during elongation through the transactivation response element RNA, CDK9 is activated and induces hyperphosphorylation of Spt5 in parallel to the hyperphosphorylation of the CTD of RNA polymerase II. However, immunodepletion experiments demonstrate that Spt5 is not required for Tat-dependent activation of the kinase. Chase experiments using the Spt5-depleted extracts demonstrate that Spt5 is not required for early elongation. However, Spt5 plays an important role in late elongation by preventing the premature dissociation of RNA from the transcription complex at terminator sequences and reducing the amount of polymerase pausing at arrest sites, including bent DNA sequences. This novel biochemical function of Spt5 is analogous to the function of NusG, an elongation factor found in Escherichia coli that enhances RNA polymerase stability on templates and shows sequence similarity to Spt5

Phyllochron Development in Cool-Season Forage Grasses

The purpose of this study was to evaluate the relationship between grass leaf insertion rate and accumulated growing degree-days, and determine the phyllochron for five perennial forage grass species and two cultivars of each species. Species field seeded in solid stands were crested wheatgrass [Agropyron desertorum (Fisch. ex. Link) Schult.], intermediate wheatgrass, [Thinopyrum intermedium Barkw. & Dewey:Syn:A. intermedium (Host) Brauv], western wheatgrass [Pascopyrum smithii (Rybd) L ve], green needlegrass (Stipa viridula Trin.), and smooth bromegrass (Bromus inermis Leyss). Species phyllochron differences ranged from 77 GDD for Mandan 404 smooth bromegrass to 114 GDD for Lodorm green needlegrass. Phyllochron differences were greater among species than cultivars within species which suggests a single equation is adequate for predicting species phyllochron for determining grazing readiness

Direct limit of matrix ordered spaces

In this paper we initiate the study of ordered f-bimodules as the inductive limit of matrix ordered spaces

Perceptions of the policing and crime mapping ‘Trailblazers’, Home Office Research Report 67

The research involved interviews with key staff involved and focus groups with members of the public to explore their views and opinions on the initiatives. The research highlights considerable public curiosity, and to an extent an appetite, for crime and criminal justice information. However a key message from the research was that providing more information should not be an end in itself. Information needs to be relevant, useable, of high quality and tailored to suit its purpose, whether that is crime prevention or holding the police to account

Row Spacing and Productivity of Russian Wild Rye Pastures in Semiarid Environments

To sustain forage yields in dry years in semiarid climates, row spacings \u3e59cm have been recommended for Russian wild rye [Psathyrostachys juncea (Fisch.) Nevski] (Lawrence & Heinrichs, 1968). However, wide row spacings promote weed invasion, soil erosion, and elevated plant crowns resulting in a rough, washboard ground surface (Kilcher, 1961). Jefferson and Kielly (1998) suggested a 30-cm row spacing for optimum sustainable forage yields in Russian wild rye in the semiarid prairie region of Canada. This study aimed to evaluate the relationship between row spacing and productivity of Russian wild rye at two semiarid sites near Mandan, in the northern Great Plains region of the USA (46º 48\u27 N latitude, 100º 55\u27 W longitude)

Development of digital feedback systems for beam position and energy at the Thomas Jefferson National Accelerator Facility

The development of beam-based digital feedback systems for the CEBAF accelerator has gone through several stages. As the accelerator moved from commissioning to operation for the nuclear physics program, the top priority was to stabilize the beam against slow energy and position drifts (<1 Hz). These slow drifts were corrected using the existing accelerator monitors and actuators driven by software running on top of the EPICS control system. With slow drifts corrected, attention turned to quantifying the higher frequency disturbances on the beam and to designing the required feedback systems needed to achieve the CEBAF design stability requirements. Results from measurements showed the major components in position and energy to be at harmonics of the power line frequencies of 60, 120, and 180 Hz. Hardware and software was installed in two locations of the accelerator as prototypes for the faster feedback systems needed. This paper gives an overview of the measured beam disturbances and the feedback systems developed

A Candidate Subspecies Discrimination System Involving a Vomeronasal Receptor Gene with Different Alleles Fixed in M. m. domesticus and M. m. musculus

Assortative mating, a potentially efficient prezygotic reproductive barrier, may prevent loss of genetic potential by avoiding the production of unfit hybrids (i.e., because of hybrid infertility or hybrid breakdown) that occur at regions of secondary contact between incipient species. In the case of the mouse hybrid zone, where two subspecies of Mus musculus (M. m. domesticus and M. m. musculus) meet and exchange genes to a limited extent, assortative mating requires a means of subspecies recognition. We based the work reported here on the hypothesis that, if there is a pheromone sufficiently diverged between M. m. domesticus and M. m. musculus to mediate subspecies recognition, then that process must also require a specific receptor(s), also sufficiently diverged between the subspecies, to receive the signal and elicit an assortative mating response. We studied the mouse V1R genes, which encode a large family of receptors in the vomeronasal organ (VNO), by screening Perlegen SNP data and identified one, Vmn1r67, with 24 fixed SNP differences most of which (15/24) are nonsynonymous nucleotide substitutions between M. m. domesticus and M. m. musculus. We observed substantial linkage disequilibrium (LD) between Vmn1r67 and Abpa27, a mouse salivary androgen-binding protein gene that encodes a proteinaceous pheromone (ABP) capable of mediating assortative mating, perhaps in conjunction with its bound small lipophilic ligand. The LD we observed is likely a case of association rather than residual physical linkage from a very recent selective sweep, because an intervening gene, Vmn1r71, shows significant intra(sub)specific polymorphism but no inter(sub)specific divergence in its nucleotide sequence. We discuss alternative explanations of these observations, for example that Abpa27 and Vmn1r67 are coevolving as signal and receptor to reinforce subspecies hybridization barriers or that the unusually divergent Vmn1r67 allele was not a product of fast positive selection, but was derived from an introgressed allele, possibly from Mus spretus

Development of a SiPM Camera for a Schwarzschild-Couder Cherenkov Telescope for the Cherenkov Telescope Array

We present the development of a novel 11328 pixel silicon photomultiplier (SiPM) camera for use with a ground-based Cherenkov telescope with Schwarzschild-Couder optics as a possible medium-sized telescope for the Cherenkov Telescope Array (CTA). The finely pixelated camera samples air-shower images with more than twice the optical resolution of cameras that are used in current Cherenkov telescopes. Advantages of the higher resolution will be a better event reconstruction yielding improved background suppression and angular resolution of the reconstructed gamma-ray events, which is crucial in morphology studies of, for example, Galactic particle accelerators and the search for gamma-ray halos around extragalactic sources. Packing such a large number of pixels into an area of only half a square meter and having a fast readout directly attached to the back of the sensors is a challenging task. For the prototype camera development, SiPMs from Hamamatsu with through silicon via (TSV) technology are used. We give a status report of the camera design and highlight a number of technological advancements that made this development possible.Comment: 8 pages, 5 figures, In Proceedings of the 34th International Cosmic Ray Conference (ICRC2015), The Hague, The Netherlands. All CTA contributions at arXiv:1508.0589

Smooth vortex precession in superfluid 4He

We have measured a precessing superfluid vortex line, stretched from a wire to the wall of a cylindrical cell. By contrast to previous experiments with a similar geometry, the motion along the wall is smooth. The key difference is probably that our wire is substantially off center. We verify several numerical predictions about the motion, including an asymmetry in the precession signature, the behavior of pinning events, and the temperature dependence of the precession.Comment: 8 pages, 8 figure