The Digital Fish Library: Using MRI to Digitize, Database, and Document the Morphological Diversity of Fish

Museum fish collections possess a wealth of anatomical and morphological data that are essential for documenting and understanding biodiversity. Obtaining access to specimens for research, however, is not always practical and frequently conflicts with the need to maintain the physical integrity of specimens and the collection as a whole. Non-invasive three-dimensional (3D) digital imaging therefore serves a critical role in facilitating the digitization of these specimens for anatomical and morphological analysis as well as facilitating an efficient method for online storage and sharing of this imaging data. Here we describe the development of the Digital Fish Library (DFL, http://www.digitalfishlibrary.org), an online digital archive of high-resolution, high-contrast, magnetic resonance imaging (MRI) scans of the soft tissue anatomy of an array of fishes preserved in the Marine Vertebrate Collection of Scripps Institution of Oceanography. We have imaged and uploaded MRI data for over 300 marine and freshwater species, developed a data archival and retrieval system with a web-based image analysis and visualization tool, and integrated these into the public DFL website to disseminate data and associated metadata freely over the web. We show that MRI is a rapid and powerful method for accurately depicting the in-situ soft-tissue anatomy of preserved fishes in sufficient detail for large-scale comparative digital morphology. However these 3D volumetric data require a sophisticated computational and archival infrastructure in order to be broadly accessible to researchers and educators

Carbon balance under a changing light environment

The natural environment of Antarctic seaweeds is characterized by changing seasonal light conditions. The ability to adapt to this light regime is one of the most important prerequisites for their ecological success. Thus, the persistence of seaweeds depends on their capacity to maintain a positive carbon balance (CB)for buildup of biomass over the course of the year. A positive CB in Antarctica occurs only during the ice-free period in spring and summer, when photosynthetically active radiation (PAR, 400–700 nm) penetrates deeply into the water column. The accumulated carbon compounds during this period are stored and remobilized to support metabolism for the rest of the year. Over the last decades climate warming has induced a severe glacial retreat in Antarctica and has opened newly ice-free areas. Increased sediment runoff, and reduced light penetration due to melting during the warmer months, may lead to a negative CB with changes in the vertical distribution of seaweeds. Furthermore, warmer winters and springs result in earlier sea-ice melt, causing an abrupt increase in light, compensating the reduction in PAR in summer or increasing the annual light budget. Studies performed in Potter Cove, Isla 25 de Mayo/King George Island, reveal that algae growing in newly ice-free areas did not acclimate to the changing light conditions. Lower or even negative CB values in areas close to the glacier runoff seem to be primarily dependent on the incoming PAR that finally determines the lower distribution limit of seaweeds. The present chapter discusses how carbon balance respond to the changing Antarctic light environment and its potential implications for the fate of benthic algal communities