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17 research outputs found
A clustering-independent method for finding differentially expressed genes in single-cell transcriptome data
Author
A Butler
C Soneson
+22 more
D Kobak
D Lähnemann
DJ McCarthy
EZ Macosko
F Tang
IJ Schoenberg
KD Korthauer
L van der Maaten
L Zappia
MI Love
N Schaum
PV Kharchenko
S Kullback
S Nabavi
S Nestorowa
S Picelli
T Hashimshony
T Sing
X Han
X Qiu
X Zhang
Z Miao
Publication venue
'Springer Science and Business Media LLC'
Publication date
Field of study
No full text
Crossref
Differential analysis between somatic mutation and germline variation profiles reveals cancer-related genes
Author
A Auton
A Gonzalez-Perez
+42 more
A Hinrichs
A Karunamurthy
A Youn
B Vogelstein
C Kandoth
C Li
D Gurdasani
D Tamborero
DM Behar
DT Ross
E Khurana
G Valentini
H Carter
I Martincorena
International Cancer Genome Consortium
J Yu
JP Struewing
JQ Chen
K Wang
KD Korthauer
KD Pruitt
L Ding
L Käll
L Mularoni
L Wu
LA Garraway
M Martin
M Noble
MDM Leiserson
Mona Singh
ND Dees
P Jia
PA Futreal
Pawel F. Przytycki
R Tian
S De
S Petrovski
T Olender
T Sjöblom
Y Fu
Y Liu
Y Rubner
Publication venue
'Springer Science and Business Media LLC'
Publication date
Field of study
No full text
Crossref
SAVER: gene expression recovery for single-cell RNA sequencing
Author
A Raj
A Zeisel
+32 more
Arjun Raj
AT Lun
CA Vallejos
DB Rubin
E Pierson
E Torre
Eduardo Torre
G Finak
G Manno La
Hannah Dueck
J Friedman
Jingshu Wang
John I. Murray
KD Korthauer
L Jiang
LJP Maaten Van Der
M Baron
Mingyao Li
Mo Huang
Nancy R. Zhang
O Padovan-Merhar
PV Kharchenko
QF Wills
R Bacher
R Chen
R Satija
Roberto Bonasio
S Hrvatin
SM Shaffer
Sydney Shaffer
V Svensson
WV Li
Publication venue
'Springer Science and Business Media LLC'
Publication date
Field of study
No full text
Crossref
An interpretable framework for clustering single-cell RNA-Seq datasets
Author
AT Lun
AY Ng
+37 more
C Trapnell
C Trapnell
C Xu
CA Vallejos
D Dueck
D Grün
D Risso
David N. Tse
David Rosenfeld
DJ McCarthy
E Pierson
F Pedregosa
FH Biase
G Finak
GD Ruxton
H. Christina Fan
Jesse M. Zhang
JT Leek
Jue Fan
KD Korthauer
L Jiang
Lvd Maaten
M Benito
M Ester
M Guo
M Love
MD Robinson
N Leng
P Brennecke
P Langfelder
P Lin
PV Kharchenko
R Rostom
T Ilicic
V Ntranos
WE Johnson
X Qiu
Publication venue
'Springer Science and Business Media LLC'
Publication date
Field of study
No full text
Crossref
Splatter: simulation of single-cell RNA sequencing data
Author
A Dobin
A Zeisel
+42 more
Alicia Oshlack
AM Klein
ATL Lun
ATL Lun
B Phipson
Belinda Phipson
C Soneson
C Trapnell
CA Vallejos
CA Vallejos
CW Law
D Dijk van
D Risso
DA DuVerle
DJ McCarthy
DJ McCarthy
E Pierson
F Chang
F Ozsolak
F Tang
G Finak
H Akima
H Wickham
I Engel
JG Camp
KD Korthauer
Luke Zappia
M Delignette-Muller
M Huang
M Juliá
MD Robinson
P Lin
P-Y Tung
R Patro
R Satija
S Anders
S Goodwin
SP Sadedin
T Kivioja
VY Kiselev
W Huber
Y Liao
Publication venue
'Springer Science and Business Media LLC'
Publication date
Field of study
No full text
Crossref
Detailed modeling of positive selection improves detection of cancer driver genes
Author
A Tsherniak
AA Mughal
+43 more
B Reva
B Vogelstein
C Von Mering
C-I Wu
D Tamborero
D Warde-Farley
D Weghorn
F Mosteller
GO Consortium
I Lee
I Martincorena
Ia Adzhubei
IA Roundtree
J Gao
J Liu
K Wang
KA Lipinski
KD Korthauer
KS Pollard
L Mularoni
L Shen
L Zappia
LB Alexandrov
LM Evans
LP Vu
M Ashburner
M Stephens
MA Newton
MS Lawrence
MS Lawrence
N McGranahan
ND Dees
PC Ng
S Nik-Zainal
S Subhash
SA Forbes
SL Ostrow
T Davoli
TCGAR Network
VI Bunik
VL Cannataro
X Wang
Z Su
Publication venue
'Springer Science and Business Media LLC'
Publication date
Field of study
No full text
Crossref
DTWscore: differential expression and cell clustering analysis for time-series single-cell RNA-seq data
Author
A Sinha
AK Shalek
+42 more
B Treutlein
C Fraley
C Trapnell
CA Vallejos
Chiping Zhang
Deliang Wu
EM Ross
F Buettner
F Hermans
G McLachlan
Guiyou Liu
J Aach
JC Marioni
JD Welch
KD Korthauer
KH Desai
L Wen
Li Xu
M Muller
M Müller
MD Robinson
MI Love
N Leng
N Yosef
Nan Wang
O Stegle
PV Kharchenko
Qinghua Jiang
S Islam
S Linnarsson
S Picelli
SC Bendall
Shuilin Jin
T Barrett
T Giorgino
TJ Hardcastle
Xiurui Zhang
Yadong Wang
Yang Hu
Z Bar-Joseph
Z Bar-Joseph
Zhuo Wang
Publication venue
'Springer Science and Business Media LLC'
Publication date
Field of study
No full text
Crossref
Evaluating methods of inferring gene regulatory networks highlights their lack of performance for single cell gene expression data
Author
A Dal Molin
A Greenfield
+46 more
A Irrthum
A-L Barabási
AA Margolin
AT Specht
C Pina
C Trapnell
CA Vallejos
CY Lim
D Marbach
D Papatsenko
D Szklarczyk
E Pierson
FH Biase
G Csardi
G Finak
G Hu
H Matsumoto
J Guo
JE Reid
Jessica C. Mar
JJ Faith
KD Korthauer
KR Campbell
L Paninski
M Delmans
M Fiers
M Guo
M Scutari
MK Jaakkola
N Leng
P Bellot
P Lin
PL Williams
PV Kharchenko
S Aibar
S Gama-Castro
S Ghazanfar
S Woodhouse
Shuonan Chen
T Schaffter
TE Chan
TN Vu
V Moignard
X Qiu
Y Buganim
Y Hochberg
Publication venue
'Springer Science and Business Media LLC'
Publication date
Field of study
No full text
Crossref
Evaluating machine learning methodologies for identification of cancer driver genes
Author
A Bashashati
A Ehsan
+44 more
A Gonzalez-Perez
AH Butt
AH Butt
AH Butt
AH Butt
B Liu
C-J Zhang
CGAR Network
D-S Cao
F Dietlein
G Biau
J Chen
J Song
J Song
JP Hou
K-C Chou
KC Chou
KD Korthauer
KUU Rehman
M Awais
M Lathrop
M-W Huang
MA Akmal
MA Akmal
O Barukab
P Feng
P Feng
RD Kumar
S Akbar
S Ilyas
S Suthaharan
S-H Guo
SA Khan
V Vapnik
W Chen
W Hussain
X Lu
Y Xu
YD Khan
YD Khan
YD Khan
YD Khan
YD Khan
YD Khan
Publication venue
'Springer Science and Business Media LLC'
Publication date
Field of study
No full text
Crossref
Targeted Perturb-seq enables genome-scale genetic screens in single cells
Author
A Dixit
A Santos
+47 more
A Sanyal
A Subramanian
A Untergasser
AB Rosenberg
AJ Hill
AS Cuomo
B Adamson
B Zacher
B Zetsche
BK Tusi
C Baccin
CP Fulco
DA Jaitin
E Deliu
E Shifrut
EA Winzeler
EM Mendenhall
EZ Macosko
F Paul
F Uzbas
G Finak
GXY Zheng
H Tilgner
HC Fan
I Dunham
I Krivega
IB Hilton
K Li
KD Korthauer
L Velten
LM Steinmetz
M Gasperini
MGP Van Der Wijst
NA Kearns
P Datlinger
P Li
P van Galen
S Chen
S Xie
S-J Dunn
SSP Rao
T Horn
T Koressaar
T Stuart
T Xie
TS Klann
Z Miao
Publication venue
'Springer Science and Business Media LLC'
Publication date
Field of study
No full text
Crossref
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