Dynamics of polymer ejection from capsid

Polymer ejection from a capsid through a nanoscale pore is an important biological process with relevance to modern biotechnology. Here, we study generic capsid ejection using Langevin dynamics. We show that even when the ejection takes place within the drift-dominated region there is a very high probability for the ejection process not to be completed. Introducing a small aligning force at the pore entrance enhances ejection dramatically. Such a pore asymmetry is a candidate for a mechanism by which a viral ejection is completed. By detailed high-resolution simulations we show that such capsid ejection is an out-of-equilibrium process that shares many common features with the much studied driven polymer translocation through a pore in a wall or a membrane. We find that the escape times scale with polymer length, $\tau \sim N^\alpha$. We show that for the pore without the asymmetry the previous predictions corroborated by Monte Carlo simulations do not hold. For the pore with the asymmetry the scaling exponent varies with the initial monomer density (monomers per capsid volume) $\rho$ inside the capsid. For very low densities $\rho \le 0.002$ the polymer is only weakly confined by the capsid, and we measure $\alpha = 1.33$, which is close to $\alpha = 1.4$ obtained for polymer translocation. At intermediate densities the scaling exponents $\alpha = 1.25$ and $1.21$ for $\rho = 0.01$ and $0.02$, respectively. These scalings are in accord with a crude derivation for the lower limit $\alpha = 1.2$. For the asymmetrical pore precise scaling breaks down, when the density exceeds the value for complete confinement by the capsid, $\rho \gtrapprox 0.25$. The high-resolution data show that the capsid ejection for both pores, analogously to polymer translocation, can be characterized as a multiplicative stochastic process that is dominated by small-scale transitions.Comment: 10 pages, 6 figure

Projected Linear Response Theory for Charge-Exchange Excitations and Double Beta Decay

The projected random phase approximation (PRPA) for charge-exchange excitations is derived from the time-dependent variational principle. Explicit results for the unperturbed energies (including the self-energy corrections), the PRPA matrices, and the transition matrix elements are presented. The effect of the projection procedure on the two-neutrino $\beta\beta$ decay in $^{76}Ge$ is briefly discussed.Comment: 12 pages text (LaTex) and 1 figure upon request, to be published in Phys. Lett.

Testing left-right extensions of the standard model of electroweak interactions with double-beta decay and LHC measurements

The minimal extension of the standard model of electroweak interactions allows for massive neutrinos, a massive right-handed boson WR, and a left-right mixing angle ζ. While an estimate of the light (electron) neutrino can be extracted from the non-observation of the neutrinoless double beta decay, the limits on the mixing angle and the mass of the righthanded (RH) boson may be extracted from a combined analysis of the double beta decay measurements (GERDA, EXO-200 and KamLAND-Zen collaborations) and ATLAS data on the two-jets two-leptons signals following the excitation of a virtual RH boson mediated by a heavy-mass neutrino. In this work we shall compare results of both types of experiments, and show that the estimates are not in tension.Facultad de Ciencias Exacta

Simultaneous analysis of neutrinoless double beta decay and LHC pp-cross sections: limits on the left-right mixing angle

The extension of the Standard Model of electroweak interactions, to accommodate massive neutrinos and/or right-handed currents, is one of the fundamental questions to answer in the cross-field of particle and nuclear physics. The consequences of such extensions would reflect upon nuclear decays, like the very exotic nuclear double-beta-decay, as well as upon high-energy proton-proton reactions of the type performed at the LHC accelerator. In this talk we shall address this question by looking at the results reported by the ATLAS and CMS collaborations, where the excitation and decay of a heavy-mass boson may be mediated by a heavy-mass neutrino in proton-proton reactions leading to two jets and two leptons, and by extracting limits on the left-right mixing, from the latest measurements of nuclear-double-beta decays reported by the GERDA and EXO collaborations.Facultad de Ciencias Exacta

Simultaneous analysis of neutrinoless double beta decay and LHC pp-cross sections: limits on the left-right mixing angle

The extension of the Standard Model of electroweak interactions, to accommodate massive neutrinos and/or right-handed currents, is one of the fundamental questions to answer in the cross-field of particle and nuclear physics. The consequences of such extensions would reflect upon nuclear decays, like the very exotic nuclear double-beta-decay, as well as upon high-energy proton-proton reactions of the type performed at the LHC accelerator. In this talk we shall address this question by looking at the results reported by the ATLAS and CMS collaborations, where the excitation and decay of a heavy-mass boson may be mediated by a heavy-mass neutrino in proton-proton reactions leading to two jets and two leptons, and by extracting limits on the left-right mixing, from the latest measurements of nuclear-double-beta decays reported by the GERDA and EXO collaborations.Facultad de Ciencias Exacta

On nuclear matrix element uncertainties in short range 0vBB decay

The evaluation of short range contributions to neutrinoless double beta decay has been challenged due to critics of the ansatz of the nuclear matrix element calculations. We comment on the critics and uncertainties of these calculations and the effect on the derived limits.Comment: 3 pages, Latex, new arguments adde