3,585 research outputs found
TISSBERT: una referencia para la validación y la comparación de métodos para la reconstrucción de series temporales de NDVI
[EN] This paper introduces the Time Series Simulation for Benchmarking of Reconstruction Techniques (TISSBERT) dataset, intended to provide a benchmark for the validation and comparison of time series reconstruction methods. Such methods are routinely used to estimate vegetation characteristics from optical remotely sensed data, where the presence of clouds decreases the usefulness of the data. As for their validation, these methods have been compared with previously published ones, although with different approaches, which sometimes lead to contradictory results. We designed the TISSBERT dataset to be generic so that it could simulate realistic reference and cloud-contaminated time series at global scale. To that end, we estimated both cloud-free and cloud-contaminated Normalized Difference Vegetation Index (NDVI) statistics for randomly selected control points and each day of the year from the Long Term Data Record Version 4 (LTDR-V4) dataset by assuming different statistical distributions. The best approach was then applied to the whole dataset, and validity of the results were estimated through the Kolmogorov-Smirnov statistic. The dataset elaboration is described thoroughly along with how to use it. The advantages and drawbacks of this dataset are then discussed, which emphasize the realistic simulation of the cloud-contaminated and reference time series. This dataset can be obtained from the authors upon demand. It will be used in a next paper to compare widely used NDVI time series reconstruction methods.[ES] En este trabajo se presenta la base de datos titulada Time Series Simulation for Benchmarking of Reconstruction Techniques (TISSBERT) con el propósito de ofrecer una herramienta para la validación y la comparación de métodos para la reconstrucción de series temporales. Tales métodos se usan de manera rutinaria para la estimación de características de la vegetación a partir de datos obtenidos por teledetección óptica, donde la presencia de nubes disminuye su utilidad. En cuanto a su validación, estos métodos se han comparado con otros publicados anteriormente, aunque desde perspectivas diferentes, lo cual conduce a resultados contradictorios. La base de datos TISSBERT se ha diseñado como una herramienta genérica para una simulación realista a escala global de series temporales de referencia o contaminadas por nubes. Para ello, se estimaron estadísticas de Normalized Difference Vegetation Index (NDVI) con y sin contaminación de nubes para unos píxeles de control seleccionados de manera aleatoria, y para cada día del año, usando la base de datos Long Term Data Record Version 4 (LTDR-V4), y probando con varias distribuciones estadísticas. La mejor metodología se aplicó al conjunto de la base de datos, y la validez de los resultados se comprobó con la prueba de Kolmogorov-Smirnov. La elaboración de la base de datos se describe detalladamente así como la manera de usarla. Finalmente, se analizan las ventajas y los inconvenientes de la base de datos TISSBERT, los cuales enfatizan la simulación realista de series temporales de referencia y con contaminación nubosa. Esta base de datos se puede obtener gratuitamente de los autores, y se usará en un futuro para comparar métodos usuales de reconstrucción de series temporales de NDVI.This work was supported by the Spanish Ministerio de Economía y Competitividad (CEOS-SPAIN2, project ESP2014-52955-R and SIM, project PCIN-2015-232). The authors also thank NASA for the free access to the LTDRV4 data.Julien, Y.; Sobrino, JA. (2018). TISSBERT: A benchmark for the validation and comparison of NDVI time series reconstruction methods. Revista de Teledetección. (51):19-31. https://doi.org/10.4995/raet.2018.9749SWORD193151Beck, P., Atzberger, C., Hogda, K.A., Johansen, B. Skidmore A. 2006. Improved monitoring of vegetation dynamics at very high latitudes: A new method using MODIS NDVI. Remote Sensing of Environment, 100, 321-334. https://doi.org/ 10.1016/j.rse.2005.10.021Chen, J., Jönsson, P., Tamura, M., Gu, Z., Matsushita, B., Eklundh, L. 2004. A simple method for reconstructing a high-quality NDVI time-series data set based on the Savitzky-Golay filter. Remote Sensing of Environment, 91, 332-334. https://doi.org/ 10.1016/j.rse.2004.03.014Cho, AR., Suh, M.S. 2013. Detection of contaminated pixels based on the short-term continuity of NDVI and correction using spatio-temporal continuity. Asia-Pacific Journal of Atmospheric Sciences, 49(4), 511-525. https://doi.org/10.1007/s13143-013- 0045-7Geng, L., Ma, M., Wang, X., Yu, W., Jia, S. and Wang, H. 2014. Comparison of eight techniques for reconstructing multi-satellite sensor time-series NDVI data sets in the Heihe river basin, China. Remote Sensing, 2014, 6, 2024-2049Hird, J.N., McDermid, G.J. 2009. Noise reduction of NDVI time series: An empirical comparison of selected techniques. Remote Sensing of Environment, 113, 248-258. https://doi.org/10.3390/rs6032024Holben, B.N. 1986. Characteristics of maximum-value composite image from temporal AVHRR data. International Journal of Remote Sensing, 7, 1417- 1434. https://doi.org/10.1080/01431168608948945Jönsson, P., Eklundh, L. 2004. TIMESAT - A program for analyzing time-series of satellite sensor data. Computers and Geoscience, 30, 833-845. https://doi.org/10.1016/j.cageo.2004.05.006Julien, Y., Sobrino, J.A. 2009. Global land surface phenology trends from GIMMS database. International Journal of Remote Sensing, 30(13), 3495-3513. https://doi.org/ 10.1080/01431160802562255Julien, Y., Sobrino, J.A. 2010. Comparison of cloudreconstruction methods for time series of composite NDVI data. Remote Sensing of Environment, 114, 618-625. https://doi.org/10.1016/j.rse.2009.11.001Julien, Y., Sobrino, J.A. 2012. Correcting Long Term Data Record V3 estimated LST from orbital drift effects. Remote Sensing of Environment, 123, 207- 219. https://doi.org/10.1016/j.rse.2012.03.016Julien, Y., Sobrino, J.A., Verhoef, W. 2006. Changes in land surface temperatures and NDVI values over Europe between 1982 and 1999. Remote Sensing of Environment, 103, 43-55. https://doi.org/10.1016/j.rse.2006.03.011Ke, L., Ding, X., Song, C. 2013. Reconstruction of time series MODIS LST in central Qinghai-Tibet plateau using geostatistical approach. IEEE Geoscience and Remote Sensing Letters, 10(6), 1602-1606. https://doi.org/10.1109/LGRS.2013.2263553Lin, C.H., Lai, K.H., Chen, Z.B., Chen, J.Y. 2014. Patch-based information reconstruction of cloud-contaminated multitemporal images. IEEE Transactions on Geoscience and Remote Sensing, 52(1), 163-174. https://doi.org/10.1109/ TGRS.2012.2237408Ma, M., Veroustraete, F. 2006. Reconstructing pathfinder AVHRR land NDVI timeseries data for the Northwest of China. Advances in Space Research, 37, 835-840. https://doi.org/10.1016/j.asr.2005.08.037Michishita, R., Jin, Z., Chen, J., Xu, B. 2014. Empirical comparison of noise reduction techniques for NDVI time-series based on a new measure. ISPRS Journal of Photogrammetry and Remote Sensing, 91, 17-28. https://doi.org/10.1016/j.isprsjprs.2014.01.003Moreno, A., García-Haro, F.J., Martínez, B., Gilabert, M.A. 2014. Noise Reduction and Gap Filling of fAPAR Time Series Using an Adapted Local Regression Filter. Remote Sensing, 6, 8238-8260. https://doi.org/10.3390/rs6098238Munyati, C., Mboweni, G. 2012. Variation in NDVI values with change in spatial resolution for semi-arid savanna vegetation: a case study in northwestern South Africa. International Journal of Remote Sensing, 34(7), 2253-2267. https://doi.org/10.1080/01431161.2012.743692Pedelty, J., Devadiga, S., Masuoka, E., Brown, M., Pinzon, J., Tucker, C., et al. 2007. Generating a long-term land data record from the AVHRR and MODIS instruments. IEEE International Geoscience and Remote Sensing Symposium (IGARSS), 2007, 1021-1025, https://doi.org/10.1109/IGARSS.2007.4422974Poggio, L., Gimona, A., Brown, I. 2012. Spatiotemporal MODIS EVI gap filling under cloud cover: an example in Scotland. ISPRS Journal of Photogrammetry and Remote Sensing, 72, 56-72. https://doi.org/10.1016/j.isprsjprs.2012.06.003Roerink, G.J., Menenti, M., Verhoef, W. 2000. Reconstructing cloudfree NDVI composites using Fourier analysis of time series. International Journal of Remote Sensing, 21(9), 1911-1917. https://doi.org/10.1080/014311600209814Rouse, J.W., Haas, R.H., Scheel, J.A., Deering, D.W. 1974. Monitoring Vegetation Systems in the Great Plains with ERTS. 3rd Earth Resource Technology Satellite (ERTS) Symposium Proceedings, Vol. 1, 48-62.Sobrino, J.A. Julien, Y. 2011. Global trends in NDVI derived parameters obtained from GIMMS data. International Journal of Remote Sensing, 32(15), 4267-4279. https://doi.org/10.1080/01431161.2010 .486414Sobrino, J.A., Julien, Y. 2016. Exploring the validity of the Long Term Data Record V4 database for land surface monitoring. IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing, 99, 1-8, https://doi.org/10.1109/ JSTARS.2016.2567642Swinnen, E., Veroustraete, F. 2008. Extending the SPOT-VEGETATION time series (1998-2006) back in time with NOAA-AVHRR data (1985- 1998) for Southern Africa. IEEE Transactions on Geoscience and Remote Sensing, 46(2), 558-572. https://doi.org/10.1109/TGRS.2007.909948Tucker, C.J. 1979. Red and photographic infrared linear combinations for monitoring vegetation. Remote Sensing of Environment, 8, 127-150. https://doi.org/10.1016/0034-4257(79)90013-0Tucker, C.J., Pinzon, J.E., Brown, M.E., Slayback, D.A. Pak, E.W., Mahoney, R., Vermote, E.F., El Saleous, N. 2005. An extended AVHRR 8-km NDVI dataset compatible with MODIS and SPOT vegetation NDVI data. International Journal of Remote Sensing, 26(20), 4485-4498. https://doi.org/10.1080/01431160500168686van Dijk, A., Callis, S., Sakamoto, C. and Decker, W. 1987. Smoothing vegetation index profiles: An alternative method for reducing radiometric disturbance in NOAA/AVHRR data. Photogrammetric Engineering and Remote Sensing, 53, 1059-1067.Viovy, N., Arino, O., Velward, A. 1992. The Best Index Slope Extraction (BISE): A method for reducing noise in NDVI time-series International Journal of Remote Sensing, 13, 1585-1590. https://doi.org/10.1080/01431169208904212Weiss, D.J., Atkinson, P.M., Bhatt, S., Mappin, B., Hay, S.I., Gething, P.W. 2014. An effective approach for gap-filling continental scale remotely sensed time-series. ISPRS Journal of Photogrammetry and Remote Sensing, 98, 106-118. https://doi.org/10.1016/j.isprsjprs.2014.10.001White, M.A., De Beurs, K.M., Didan, K., Inouye, D. W., Richardson, A.D., et al. 2009. Intercomparison, interpretation, and assessment of spring phenology in North America estimated from remote sensing for 1982-2006. Global Change Biology, 15, 2335-2359. https://doi.org/10.1111/j.1365-2486.2009.01910.xXiao, Z., Liang, S., Wang, T., Liu, Q. 2015. Reconstruction of satellite-retrieved land-surface reflectance based on temporally-continuous vegetation indices. Remote Sensing, 7, 9844-9864. https://doi.org/10.3390/rs70809844Xu, L., Li, B., Yuan, Y., Gao, X., Zhang, T. 2015. A temporal-spatial iteration method to reconstruct NDVI time series datasets. Remote Sensing, 7, 8906- 8924. https://doi.org/10.3390/rs70708906Yang, G., Shen, H., Zhang, L., He, Z. and Li, X. 2015. A moving weighted harmonic analysis method for reconstructing high-quality SPOT VEGETATION NDVI time-series data. IEEE Transactions on Geoscience and Remote Sensing, 53(11), 6008- 6021. https://doi.org/10.1109/TGRS.2015.2431315Zhou, J., Jia, L. and Menenti, M. 2015. Reconstruction of global MODIS NDVI time series: Performance of Harmonic ANalysis of Time Series (HANTS). Remote Sensing of Environment, 163, 217-228. https://doi.org/10.1016/j.rse.2015.03.01
Viscoelastic response of contractile filament bundles
The actin cytoskeleton of adherent tissue cells often condenses into filament
bundles contracted by myosin motors, so-called stress fibers, which play a
crucial role in the mechanical interaction of cells with their environment.
Stress fibers are usually attached to their environment at the endpoints, but
possibly also along their whole length. We introduce a theoretical model for
such contractile filament bundles which combines passive viscoelasticity with
active contractility. The model equations are solved analytically for two
different types of boundary conditions. A free boundary corresponds to stress
fiber contraction dynamics after laser surgery and results in good agreement
with experimental data. Imposing cyclic varying boundary forces allows us to
calculate the complex modulus of a single stress fiber.Comment: Revtex with 24 pages, 7 Postscript figures included, accepted for
publication in Phys. Rev.
Comment on ``Phase ordering in chaotic map lattices with conserved dynamics''
Angelini, Pellicoro, and Stramaglia [Phys. Rev. E {\bf 60}, R5021 (1999),
cond-mat/9907149] (APS) claim that the phase ordering of two-dimensional
systems of sequentially-updated chaotic maps with conserved ``order parameter''
does not belong, for large regions of parameter space, to the expected
universality class. We show here that these results are due to a slow crossover
and that a careful treatment of the data yields normal dynamical scaling.
Moreover, we construct better models, i.e. synchronously-updated coupled map
lattices, which are exempt from these crossover effects, and allow for the
first precise estimates of persistence exponents in this case.Comment: 3 pages, to be published in Phys. Rev.
Comment on "Localized behavior near the Zn impurity in YBa2Cu4O8 as measured by nuclear quadrupole resonance"
Williams and Kramer [Phys. Rev. B {\bf 64}, 104506 (2001)] have recently
argued against the existence of staggered magnetic moments residing on several
lattice sites around Zn impurities in YBCO superconductors. This claim, which
is in line with an earlier publication by Williams, Tallon and Dupree [Phys.
Rev. B {\bf 61}, 4319 (2000)], is however in contradiction with a large body of
experimental data from different NMR groups. On the contrary, the authors argue
in favor of a very localized spin and charge density on Cu sites first
neighbors to Zn. We show that the conclusions of Williams and Kramer arise from
erroneous interpretations of NMR and NQR data.Comment: 4 page
Strong normal-incidence infrared absorption in self-organized InAs/InAlAs quantum dots grown on InP(001)
International audienceInAs self-assembled quantum dots in InAlAs matrix grown on InP001 substrates have been fabricated using Stranski-Krastanov growth mode. A strong in-plane polarized intraband absorption in the 10.6-20 m wavelength region has been observed and ascribed to a transition from the ground electron state to an excited state confined in the layer plane along the 110 direction. The absorption at normal-incidence reaches 7.8% for ten layers of n-doped quantum dots. The oscillator strength of the intraband transition is comparable to that achieved in quantum wells for a conduction band intersubband transition. The dependence of the intraband absorption on carrier concentration and temperature suggests a quantum-wire type confinement potential
A high-affinity antibody against the CSP N-terminal domain lacks Plasmodium falciparum inhibitory activity
Malaria is a global health concern and research efforts are ongoing to develop a superior vaccine to RTS,S/AS01. To guide immunogen design, we seek a comprehensive understanding of the protective humoral response against Plasmodium falciparum circumsporozoite protein (PfCSP). In contrast to the well-studied responses to the repeat region and the C-terminus, the antibody response against the N-terminal domain of PfCSP (N-CSP) remains obscure. Here, we characterized the molecular recognition and functional efficacy of the N-CSP-specific monoclonal antibody 5D5. The crystal structure at 1.85 Åresolution revealed that 5D5 binds an α-helical epitope in N-CSP with high affinity through extensive shape and charge complementarity, and the unusual utilization of an N-linked glycan. Nevertheless, functional studies indicated low 5D5 binding to live Pf sporozoites, and lack of sporozoite inhibition in vitro and in mosquitoes. Overall, our data on low recognition and inhibition of sporozoites do not support the inclusion of the 5D5 epitope into the next generation of CSP-based vaccines.Summary Statement The Plasmodium falciparum sporozoite surface protein, PfCSP, is an attractive vaccine target, but the antibody response against the CSP N-terminal domain has remained understudied. Here, to guide immunogen design, Thai et al. provide insights into the binding motif and functional efficacy of the N-terminal domain-specific monoclonal antibody, 5D5
Competition between fluctuations and disorder in frustrated magnets
We investigate the effects of impurities on the nature of the phase
transition in frustrated magnets, in d=4-epsilon dimensions. For sufficiently
small values of the number of spin components, we find no physically relevant
stable fixed point in the deep perturbative region (epsilon << 1), contrarily
to what is to be expected on very general grounds. This signals the onset of
important physical effects.Comment: 4 pages, 3 figures, published versio
Coexistence of Superconductivity and Antiferromagnetism in Multilayered High- Superconductor HgBaCaCuO: A Cu-NMR Study
We report a coexistence of superconductivity and antiferromagnetism in
five-layered compound HgBaCaCuO (Hg-1245) with K,
which is composed of two types of CuO planes in a unit cell; three inner
planes (IP's) and two outer planes (OP's). The Cu-NMR study has revealed that
the optimallydoped OP undergoes a superconducting (SC) transition at
K, whereas the three underdoped IP's do an antiferromagnetic (AF) transition
below 60 K with the Cu moments of . Thus bulk
superconductivity with a high value of K and a static AF ordering at
K are realized in the alternating AF and SC layers. The AF-spin
polarization at the IP is found to induce the Cu moments of at
the SC OP, which is the AF proximity effect into the SC OP.Comment: 6 pages, 8 figure
Doping Dependence of Anisotropic Resistivities in Trilayered Superconductor Bi2Sr2Ca2Cu3O10+delta (Bi-2223)
The doping dependence of the themopower, in-plane resistivity rho_ab(T),
out-of-plane resistivity rho_c(T), and susceptibility has been systematically
measured for high-quality single crystal Bi2Sr2Ca2Cu3O10+delta. We found that
the transition temperature Tc and pseudogap formation temperature T_rho_c*,
below which rho_c shows a typical upturn, do not change from their optimum
values in the "overdoped" region, even though doping actually proceeds. This
suggests that, in overdoped region, the bulk is determined by the always
underdoped inner plane, which have a large superconducting gap, while the
carriers are mostly doped in the outer planes, which have a large phase
stiffness.Comment: 5 pages, 4 figures. to be published in PR
Magnetic ordering in Sr2RuO4 induced by nonmagnetic impurities
We report unusual effects of nonmagnetic impurities on the spin-triplet
superconductor Sr2RuO4. The substitution of nonmagnetic Ti4+ for Ru4+ induces
localized-moment magnetism characterized by unexpected Ising anisotropy with
the easy axis along the interlayer c direction. Furthermore, for x(Ti) > 0.03
magnetic ordering occurs in the metallic state with the remnant magnetization
along the c-axis. We argue that the localized moments are induced in the Ru4+
and/or oxygen ions surrounding Ti4+ and that the ordering is due to their
interaction mediated by itinerant Ru-4d electrons with strong spin
fluctuations.Comment: 5 pages, 4figure
- …