A new protein linear motif benchmark for multiple sequence alignment software-0

subset 1, showing the extreme observations (stars or circles), lower quartile, median, upper quartile, and largest observation in each similarity category. b) Execution times in seconds required to construct all the multiple alignments in Subset 1. Programs are displayed in the order of the Friedman test using the SPS scores for group V11 (additional file ), with the highest scoring program on the left.<p><b>Copyright information:</b></p><p>Taken from "A new protein linear motif benchmark for multiple sequence alignment software"</p><p>http://www.biomedcentral.com/1471-2105/9/213</p><p>BMC Bioinformatics 2008;9():213-213.</p><p>Published online 25 Apr 2008</p><p>PMCID:PMC2374782.</p><p></p

A new protein linear motif benchmark for multiple sequence alignment software-2

different conditions, showing the extreme observations (stars or circles), lower quartile, median, upper quartile, and largest observation. Significant differences, according to a Wilcoxon signed ranks test (p < 0.05), are indicated by an asterix on the x-axis. P-values for the Wilcoxon tests are available in additional file , table 3. a) SPS scores for alignments of sequences with validated motifs only compared to alignments including sequences with errors. b) SPS scores for alignments of sequences with validated motifs only compared to alignments including sequences containing false positive (FP) motifs. c) SPS scores for alignments of sequences with validated motifs only compared to alignments including sequences that do not contain any examples of the motif.<p><b>Copyright information:</b></p><p>Taken from "A new protein linear motif benchmark for multiple sequence alignment software"</p><p>http://www.biomedcentral.com/1471-2105/9/213</p><p>BMC Bioinformatics 2008;9():213-213.</p><p>Published online 25 Apr 2008</p><p>PMCID:PMC2374782.</p><p></p

A new protein linear motif benchmark for multiple sequence alignment software-4

subset 1, showing the extreme observations (stars or circles), lower quartile, median, upper quartile, and largest observation in each similarity category. b) Execution times in seconds required to construct all the multiple alignments in Subset 1. Programs are displayed in the order of the Friedman test using the SPS scores for group V11 (additional file ), with the highest scoring program on the left.<p><b>Copyright information:</b></p><p>Taken from "A new protein linear motif benchmark for multiple sequence alignment software"</p><p>http://www.biomedcentral.com/1471-2105/9/213</p><p>BMC Bioinformatics 2008;9():213-213.</p><p>Published online 25 Apr 2008</p><p>PMCID:PMC2374782.</p><p></p