Bodenchemische Charakteristka entlang präferentieller Fließwege in Waldböden mit unterschiedlicher P-Verfügbarkeit

In der vorliegenden Studie wurden die präferentiellen Fließwege in verschiedenen Waldböden charakterisiert und bodenchemische Parameter im Bereich der Fließwege sowie der nicht-durchflossenen Bodenmatrix analysiert. Die untersuchten Waldstandorte unterscheiden sich signifikant hinsichtlich der Verfügbarkeit mineralischer Phosphor-Quellen (P-reich zu P-arm), was sehr wahrscheinlich die Ernährungsstrategie der Buchenbestockung an diesen Standorten wesentlich beeinflusst. Zur Charakterisierung der präferentiellen Fließwege in den Böden wurde diese mittels Farbtracer-Experimenten, digitaler Bildanalyse und statistischer Auswertung der Verteilungsmuster untersucht. Die bodenchemische Charakterisierung der Fließwege erfolgte anhand Analyse der chemischen Bindungsformen von P, Al, Fe und Mn, der C- und N-Gesamtgehalte sowie daraus berechneter Verhältnisse (z.B. C:P). Die Ergebnisse zeigen, dass sich sowohl die Fließweg-Verteilung in den Böden als auch die Verteilung der bodenchemischen Parameter an den einzelnen Standorten deutlich unterscheiden. Trotz sehr unterschiedlicher P-Gehalte im Boden wiesen die Gehalte an labilem, leicht pflanzenverfügbarem P in den organischen Auflagen aller Standorte ähnliche Größenordnungen auf. Während der P-arme Standort jedoch sehr stark sinkende labile P-Gehalte mit der Tiefe zeigte, war der Tiefengradient dieser Fraktion am P-reichen Standort deutlich schwächer ausgeprägt. Die Verhältnisse von C zu organisch gebundenem P (C:Po) waren am P-reichen Standort gering und nahmen über die intermediären bis hin zum schlecht P-versorgten Standort deutlich zu. Am P-armen Standort deuten die sehr hohen C:Po-Werte, insbesondere in der organischen Auflage, auf intensive P-Recyclingprozesse hin. Des Weiteren wurden Hinweise auf eine Anreicherung organisch gebundender P-Formen in präferentiellen Fließwegen im Vergleich zur Bodenmatrix gefunden, die mit einem erhöhten C:Po in den Fließwegen einhergehen

Modelling the impact of agroforestry on hydrology of Mara River Basin in East Africa

Land�use change is one of the main drivers of change of watershed hydrology. The effect of forestry related land�use changes (e.g. afforestation, deforestation, agroforestry) on water fluxes depends on climate, watershed characteristics and spatial scale. The Soil and Water Assessment Tool (SWAT) model was calibrated, validated and used to simulate the impact of agroforestry on the water balance in Mara River Basin (MRB) in East Africa. Model performance was assessed by Nash-Sutcliffe Efficiency (NSE) and Kling-Gupta Efficiency (KGE). The NSE (and KGE) values for calibration and validation were: 0.77 (0.88) and 0.74 (0.85) for the Nyangores sub-watershed, and 0.78 (0.89) and 0.79 (0.63) for the entire MRB. It was found that agroforestry in the watershed would generally reduce surface runoff, mainly due to enhanced infiltration. However, it would also increase evapotranspiration and consequently reduce the baseflow and the overall water yield, which was attributed to increased water use by trees. Spatial scale was found to have a significant effect on water balance; the impact of agroforestry was higher at the smaller headwater catchment (Nyangores) than for the larger watershed (entire MRB). However, the rate of change in water yield with increase in area under agroforestry was different for the two and could be attributed to the spatial variability of climate within MRB. Our results suggest that direct extrapolation of the findings from a small sub-catchment to a larger watershed may not always be accurate. These findings could guide watershed managers on the level of trade-offs to make between reduced water yields and other benefits (e.g. soil erosion control, improved soil productivity) offered by agroforestry. This article is protected by copyright. All rights reserved

From segment to somite: segmentation to epithelialization analyzed within quantitative frameworks

One of the most visually striking patterns in the early developing embryo is somite segmentation. Somites form as repeated, periodic structures in pairs along nearly the entire caudal vertebrate axis. The morphological process involves short- and long-range signals that drive cell rearrangements and cell shaping to create discrete, epithelialized segments. Key to developing novel strategies to prevent somite birth defects that involve axial bone and skeletal muscle development is understanding how the molecular choreography is coordinated across multiple spatial scales and in a repeating temporal manner. Mathematical models have emerged as useful tools to integrate spatiotemporal data and simulate model mechanisms to provide unique insights into somite pattern formation. In this short review, we present two quantitative frameworks that address the morphogenesis from segment to somite and discuss recent data of segmentation and epithelialization

From Dynamic Expression Patterns to Boundary Formation in the Presomitic Mesoderm

The segmentation of the vertebrate body is laid down during early embryogenesis. The formation of signaling gradients, the periodic expression of genes of the Notch-, Fgf- and Wnt-pathways and their interplay in the unsegmented presomitic mesoderm (PSM) precedes the rhythmic budding of nascent somites at its anterior end, which later develops into epithelialized structures, the somites. Although many in silico models describing partial aspects of somitogenesis already exist, simulations of a complete causal chain from gene expression in the growth zone via the interaction of multiple cells to segmentation are rare. Here, we present an enhanced gene regulatory network (GRN) for mice in a simulation program that models the growing PSM by many virtual cells and integrates WNT3A and FGF8 gradient formation, periodic gene expression and Delta/Notch signaling. Assuming Hes7 as core of the somitogenesis clock and LFNG as modulator, we postulate a negative feedback of HES7 on Dll1 leading to an oscillating Dll1 expression as seen in vivo. Furthermore, we are able to simulate the experimentally observed wave of activated NOTCH (NICD) as a result of the interactions in the GRN. We esteem our model as robust for a wide range of parameter values with the Hes7 mRNA and protein decays exerting a strong influence on the core oscillator. Moreover, our model predicts interference between Hes1 and HES7 oscillators when their intrinsic frequencies differ. In conclusion, we have built a comprehensive model of somitogenesis with HES7 as core oscillator that is able to reproduce many experimentally observed data in mice

Time-Lapse Analysis and Mathematical Characterization Elucidate Novel Mechanisms Underlying Muscle Morphogenesis

Skeletal muscle morphogenesis transforms short muscle precursor cells into long, multinucleate myotubes that anchor to tendons via the myotendinous junction (MTJ). In vertebrates, a great deal is known about muscle specification as well as how somitic cells, as a cohort, generate the early myotome. However, the cellular mechanisms that generate long muscle fibers from short cells and the molecular factors that limit elongation are unknown. We show that zebrafish fast muscle fiber morphogenesis consists of three discrete phases: short precursor cells, intercalation/elongation, and boundary capture/myotube formation. In the first phase, cells exhibit randomly directed protrusive activity. The second phase, intercalation/elongation, proceeds via a two-step process: protrusion extension and filling. This repetition of protrusion extension and filling continues until both the anterior and posterior ends of the muscle fiber reach the MTJ. Finally, both ends of the muscle fiber anchor to the MTJ (boundary capture) and undergo further morphogenetic changes as they adopt the stereotypical, cylindrical shape of myotubes. We find that the basement membrane protein laminin is required for efficient elongation, proper fiber orientation, and boundary capture. These early muscle defects in the absence of either lamininβ1 or lamininγ1 contrast with later dystrophic phenotypes in lamininα2 mutant embryos, indicating discrete roles for different laminin chains during early muscle development. Surprisingly, genetic mosaic analysis suggests that boundary capture is a cell-autonomous phenomenon. Taken together, our results define three phases of muscle fiber morphogenesis and show that the critical second phase of elongation proceeds by a repetitive process of protrusion extension and protrusion filling. Furthermore, we show that laminin is a novel and critical molecular cue mediating fiber orientation and limiting muscle cell length

Molecular techniques for pathogen identification and fungus detection in the environment

Many species of fungi can cause disease in plants, animals and humans. Accurate and robust detection and quantification of fungi is essential for diagnosis, modeling and surveillance. Also direct detection of fungi enables a deeper understanding of natural microbial communities, particularly as a great many fungi are difficult or impossible to cultivate. In the last decade, effective amplification platforms, probe development and various quantitative PCR technologies have revolutionized research on fungal detection and identification. Examples of the latest technology in fungal detection and differentiation are discussed here

A Positive Regulatory Loop between foxi3a and foxi3b Is Essential for Specification and Differentiation of Zebrafish Epidermal Ionocytes

BACKGROUND: Epidermal ionocytes play essential roles in the transepithelial transportation of ions, water, and acid-base balance in fish embryos before their branchial counterparts are fully functional. However, the mechanism controlling epidermal ionocyte specification and differentiation remains unknown. METHODOLOGY/PRINCIPAL FINDINGS: In zebrafish, we demonstrated that Delta-Notch-mediated lateral inhibition plays a vital role in singling out epidermal ionocyte progenitors from epidermal stem cells. The entire epidermal ionocyte domain of genetic mutants and morphants, which failed to transmit the DeltaC-Notch1a/Notch3 signal from sending cells (epidermal ionocytes) to receiving cells (epidermal stem cells), differentiates into epidermal ionocytes. The low Notch activity in epidermal ionocyte progenitors is permissive for activating winged helix/forkhead box transcription factors of foxi3a and foxi3b. Through gain- and loss-of-function assays, we show that the foxi3a-foxi3b regulatory loop functions as a master regulator to mediate a dual role of specifying epidermal ionocyte progenitors as well as of subsequently promoting differentiation of Na(+),K(+)-ATPase-rich cells and H(+)-ATPase-rich cells in a concentration-dependent manner. CONCLUSIONS/SIGNIFICANCE: This study provides a framework to show the molecular mechanism controlling epidermal ionocyte specification and differentiation in a low vertebrate for the first time. We propose that the positive regulatory loop between foxi3a and foxi3b not only drives early ionocyte differentiation but also prevents the complete blockage of ionocyte differentiation when the master regulator of foxi3 function is unilaterally compromised

PEG−peptide conjugates

The remarkable diversity of the self-assembly behavior of PEG−peptides is reviewed, including self-assemblies formed by PEG−peptides with β-sheet and α-helical (coiled-coil) peptide sequences. The modes of self-assembly in solution and in the solid state are discussed. Additionally, applications in bionanotechnology and synthetic materials science are summarized

Plasma and cellular fibronectin: distinct and independent functions during tissue repair

Fibronectin (FN) is a ubiquitous extracellular matrix (ECM) glycoprotein that plays vital roles during tissue repair. The plasma form of FN circulates in the blood, and upon tissue injury, is incorporated into fibrin clots to exert effects on platelet function and to mediate hemostasis. Cellular FN is then synthesized and assembled by cells as they migrate into the clot to reconstitute damaged tissue. The assembly of FN into a complex three-dimensional matrix during physiological repair plays a key role not only as a structural scaffold, but also as a regulator of cell function during this stage of tissue repair. FN fibrillogenesis is a complex, stepwise process that is strictly regulated by a multitude of factors. During fibrosis, there is excessive deposition of ECM, of which FN is one of the major components. Aberrant FN-matrix assembly is a major contributing factor to the switch from normal tissue repair to misregulated fibrosis. Understanding the mechanisms involved in FN assembly and how these interplay with cellular, fibrotic and immune responses may reveal targets for the future development of therapies to regulate aberrant tissue-repair processes