An assessment of data sources, data quality and changes in national forest monitoring capacities in the Global Forest Resources Assessment 2005-2020

Globally, countries report forest information to the Food and Agriculture Organization of the United Nations (FAO) Global Forest Resources Assessments (FRA) at regular intervals. While the status and trends of national forest monitoring capacities have been previously assessed for the tropics, this has not been systematically done worldwide. In this paper, we assess the use and quality of forest monitoring data sources for national reporting to the FRA in 236 countries and territories. More specifically, we (1) analyze the use of Remote Sensing (RS) for forest area monitoring and the use of National Forest Inventory (NFI) for monitoring forest area, growing stock, biomass, carbon stock, and other attributes in FRA 2005-2020, (2) assess data quality in FRA 2020 using FAO Tier-based indicators, and (3) zoom in to investigate changes in tropical forest monitoring capacities in FRA 2010 - 2020. Globally, the number of countries monitoring forest area using RS at good to very good capacities increased from 55 in FRA 2005 to 99 in FRA 2020. Likewise, the number of countries with good to very good NFI capacities increased from 48 in FRA 2005 to 102 in FRA 2020. This corresponds to ~85% of the global forest area monitored with one or more nationally-produced up-to-date RS products or NFI in FRA 2020. For large proportions of global forests, the highest quality data was used in FRA 2020 for reporting on forest area (93%), growing stock (85% ), biomass (76%), and carbon pools (61%). Overall, capacity improvements are more widespread in the tropics, which can be linked to continued international investments for forest monitoring especially in the context of Reducing Emissions from Deforestation and Forest Degradation in tropical countries (REDD+). More than 50% of the tropical countries with targeted international support improved both RS and NFI capacities in the period 2010-2020 on top of those that already had persistent good to very good capabilities. There is also a link between improvements in national capacities and improved governance measured against Worldwide Governance Indicators (WGI). Our findings – the first global study – suggest an ever-improving data basis for national reporting on forest resources in the context of climate and development commitments, e.g. the Paris Agreement and Sustainable Development Goals

Crystallographic structure reveals phosphorylated pilin from Neisseria : phosphoserine sites modify type IV pilus surface chemistry and fibre morphology

Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/72468/1/j.1365-2958.1999.01184.x.pd

Adsorption of mono- and multivalent cat- and anions on DNA molecules

Adsorption of monovalent and multivalent cat- and anions on a deoxyribose nucleic acid (DNA) molecule from a salt solution is investigated by computer simulation. The ions are modelled as charged hard spheres, the DNA molecule as a point charge pattern following the double-helical phosphate strands. The geometrical shape of the DNA molecules is modelled on different levels ranging from a simple cylindrical shape to structured models which include the major and minor grooves between the phosphate strands. The densities of the ions adsorbed on the phosphate strands, in the major and in the minor grooves are calculated. First, we find that the adsorption pattern on the DNA surface depends strongly on its geometrical shape: counterions adsorb preferentially along the phosphate strands for a cylindrical model shape, but in the minor groove for a geometrically structured model. Second, we find that an addition of monovalent salt ions results in an increase of the charge density in the minor groove while the total charge density of ions adsorbed in the major groove stays unchanged. The adsorbed ion densities are highly structured along the minor groove while they are almost smeared along the major groove. Furthermore, for a fixed amount of added salt, the major groove cationic charge is independent on the counterion valency. For increasing salt concentration the major groove is neutralized while the total charge adsorbed in the minor groove is constant. DNA overcharging is detected for multivalent salt. Simulations for a larger ion radii, which mimic the effect of the ion hydration, indicate an increased adsorbtion of cations in the major groove.Comment: 34 pages with 14 figure

Probabilistic Reachability for Parametric Markov Models

Abstract. Given a parametric Markov model, we consider the problem of computing the rational function expressing the probability of reaching a given set of states. To attack this principal problem, Daws has suggested to first convert the Markov chain into a finite automaton, from which a regular expression is computed. Afterwards, this expression is evaluated to a closed form function representing the reachability probability. This paper investigates how this idea can be turned into an effective procedure. It turns out that the bottleneck lies in the growth of the regular expression relative to the number of states (nΘ(logn)). We therefore proceed differently, by tightly intertwining the regular expression computation with its evaluation. This allows us to arrive at an effective method that avoids this blow up in most practical cases. We give a detailed account of the approach, also extending to parametric models with rewards and with non-determinism. Experimental evidence is provided, illustrating that our implementation provides meaningful insights on non-trivial models.

Genome-wide association meta-analysis of single-nucleotide polymorphisms and symptomatic venous thromboembolism during therapy for acute lymphoblastic leukemia and lymphoma in caucasian children

Symptomatic venous thromboembolism (VTE) occurs in five percent of children treated for acute lymphoblastic leukemia (ALL), but whether a genetic predisposition exists across different ALL treatment regimens has not been well studied.MethodsWe undertook a genome-wide association study (GWAS) meta-analysis for VTE in consecutively treated children in the Nordic/Baltic acute lymphoblastic leukemia 2008 (ALL2008) cohort and the Australian Evaluation of Risk of ALL Treatment-Related Side-Effects (ERASE) cohort. A total of 92 cases and 1481 controls of European ancestry were included.ResultsNo SNPs reached genome-wide significance (p -8) in either cohort. Among the top 34 single-nucleotide polymorphisms (SNPs) (p -6), two loci had concordant effects in both cohorts: ALOX15B (rs1804772) (MAF: 1%; p = 3.95 × 10-7) that influences arachidonic acid metabolism and thus platelet aggregation, and KALRN (rs570684) (MAF: 1%; p = 4.34 × 10-7) that has been previously associated with risk of ischemic stroke, atherosclerosis, and early-onset coronary artery disease.ConclusionThis represents the largest GWAS meta-analysis conducted to date associating SNPs to VTE in children and adolescents treated on childhood ALL protocols. Validation of these findings is needed and may then lead to patient stratification for VTE preventive interventions. As VTE hemostasis involves multiple pathways, a more powerful GWAS is needed to detect combination of variants associated with VTE.Marion K. Mateos, Morten Tulstrup, Michael CJ Quinn, Ruta Tuckuviene, Glenn M. Marshall, Ramneek Gupt

Measurement of event-shape observables in Z→ℓ+ℓ− events in pp collisions at √ s=7 TeV with the ATLAS detector at the LHC

Event-shape observables measured using charged particles in inclusive $Z$-boson events are presented, using the electron and muon decay modes of the $Z$ bosons. The measurements are based on an integrated luminosity of $1.1 {\rm fb}^{-1}$ of proton--proton collisions recorded by the ATLAS detector at the LHC at a centre-of-mass energy $\sqrt{s}=7$ TeV. Charged-particle distributions, excluding the lepton--antilepton pair from the $Z$-boson decay, are measured in different ranges of transverse momentum of the $Z$ boson. Distributions include multiplicity, scalar sum of transverse momenta, beam thrust, transverse thrust, spherocity, and $\mathcal{F}$-parameter, which are in particular sensitive to properties of the underlying event at small values of the $Z$-boson transverse momentum. The Sherpa event generator shows larger deviations from the measured observables than Pythia8 and Herwig7. Typically, all three Monte Carlo generators provide predictions that are in better agreement with the data at high $Z$-boson transverse momenta than at low $Z$-boson transverse momenta and for the observables that are less sensitive to the number of charged particles in the event.Comment: 36 pages plus author list + cover page (54 pages total), 14 figures, 4 tables, submitted to EPJC, All figures including auxiliary figures are available at http://atlas.web.cern.ch/Atlas/GROUPS/PHYSICS/PAPERS/STDM-2014-0

A CT-based method to compute femur remodelling after total hip arthroplasty

Bone remodelling after total hip arthroplasty has been largely observed and investigated. Most studies rely on projective images and only few obtain 3D information with limited spatial resolution. This study proposes a method to provide quantitative, 3D high-resolution data about femur bone density variations, by means of CT volume processing. This would offer a tool for further research and clinical studies. Five patients subjected to primary, cementless total hip arthroplasty were considered. Calibrated CT volumes were acquired before, just after surgery and 1 yr later. Bone remodelling hinders accurate alignment of femur volumes acquired after a year; instead, prosthesis stem remains unchanged. Thus, after metal artefact reduction, prosthesis was segmented, and stem-based accurate alignment was obtained. A test to exclude prosthesis migration was performed by considering specific femur anatomical landmarks. Bone density error due to artefact reduction and realignment was estimated. Quantitative differences in bone mineral density were computed for each voxel, providing a resolution of about 1 mm. Preliminary results showed that the femur underwent consistent remodelling after a year. Widespread bone density losses appeared in those areas where strain-adaptive remodelling is normally expected, particularly about the calcar. Conversely, distal areas with clear stem-bone contact showed considerable density gains