Antibiotic Susceptibility of Coliform and Vibrio Species in Shellfishes from Estuary Chronically Contaminated with Polycyclic Aromatic Hydrocarbon

Polycyclic aromatic hydrocarbon (PAH) levels and antibiotic susceptibility of coliform and Vibrio species in swimming crab (Callinectes latimanus), mangrove oyster (Crassostrea tulipa), and periwinkle (Tympanotonus fuscatus) from Qua Iboe River and Cross River estuaries were assessed using standard procedures. Bacterial load in the shellfishes and surface water was 1.2 to 1.4 times higher than the control, but the difference was significant at p = 0.05. Total PAH level of 11.36 ± 0.3 mg kg-1 in C. latimanus, 17.57 ± 0.9 mg kg-1 in C. tulipa, and 13.88 ± 0.5 mg kg-1 in T. fuscatus compared to 7.51 ± 0.3 mg L-1 in the surface water and indicates 1.06 to 1.57 times higher PAH accumulation than in surface water and was significant (p = 0.05). The dominant coliform and Vibrio species in the shellfishes were Serratia marcescens, Enterobacter aerogenes, Escherichia coli, Klebsiella, Citrobacter diversus, and Vibrio alginolyticus, V. estuarianus, V. fischeri, V. fluvialis and V. parahaemolyticus. A mean of 21.2% difference between two study groups indicates that shellfishes were the main source of gastrointestinal illness with 43% median resistance to commercially available antibiotics. Accumulation of PAH and abundance of an emerging multiple antibiotic resistant bacterial strains is a cause of concern and potential health risk to consumers of the shellfishes. Keywords: Shellfish, coliform, Vibrio, polycyclic aromatic hydrocarbon, antibiotic resistanc

Enhanced biogas production from anaerobic co-digestion of lignocellulosic biomass and poultry feces using source separated human urine as buffering agent

Effect of source separated human urine as buffering agent compared to sodium bicarbonate and water in anaerobic co-digestion of lignocellulosic biomass and poultry feces was evaluated in laboratory scale reactor for 180 days at 37 ± 2°C. Mean biogas volume ranged from 37 ± 8 to 101 ± 18 mL gVS−1 in the urine buffered reactors which was 1–5 times higher than the bicarbonate and water buffered reactors and the difference was significant at p = 0. 05. Total volatile fatty acids (VFA) concentration ranged between 396 and 1,400 mg L−1 with a pH of 6.9 ± 0.3 and 7.8 ± 0.1, respectively. In contrast, VFA concentration ranged between 386 and 3,109 mg L−1 (pH 7.6 ± 0.2 and 4.8 ± 0.4) in sodium bicarbonate buffered digestate and control (water) respectively. The result indicates buffering capacity of urine on anaerobic co-digestion with positive effect on biogas production. The Archaeal isoprenoids included markers of aceticlastic and hydrogenotrophic methanogens with a relative abundance that ranged between 0.71–18, 3–55, and 2–59 μg g−1 dry matter in the water (control), bicarbonate and urine buffered digestate, respectively. The Archaeal abundance was 1.12 and 6 times higher in the combined female/male urine than the bicarbonate buffered digestate and the control, and the difference was significant at p = 0.05. Overall, this study demonstrates that human urine with no pharmaceutical loadings as a wetting and buffering agent is a promising option for anaerobic co-digestion with competitive edge over sodium bicarbonate on lignocellulosic biomass saccharification for enhanced biogas production

Speed of capillary blood flow and d-dimer levels in sickle cell anaemia patients in Calabar, cross river state

Background: The experience of painful episodes of ill health caused by sequelae of erythrocytes sickling, impaired blood flow, hypercoagulation and vaso-occlusion is one of the hallmarks of sickle cell disease. Preventing painful episodes and promoting the physical wellbeing of persons with sickle cell disease is usually a major objective in the management of the condition. The purpose of this study is to investigate capillary blood flow and D-Dimer activities in people with sickle cell anaemia.Methods: A total of 90 subjects (27 males and 63 females) participated in the study, the study comprised of 34 HbSS patients, three were in crisis and thirty-one in steady state, 9 sickle cell carriers (HbAS) and 47 HbAA were control subjects. The haemoglobin phenotype was determined using haemoglobin electrophoresis at alkaline pH (8.6), speed of capillary blood flow was estimated using vascular Doppler ultrasonographic technique and D-Dimer was determined using ELISA method.Results: Results obtained showed that there was a significant variation (p=0.042) in the mean levels D-Dimer among the groups. There was however no significant variations (p>0.05) in the other parameters among the groups. A post hoc analysis of mean D-Dimer in sickle cell patients, sickle cell carriers and controls showed that the sickle cell patients had significantly higher D-Dimer levels compared with controls.Conclusions: Sickle cells patients in steady state had higher D-Dimer levels compared with controls and sickle cell patients in crisis had lower speed of capillary blood flow when compared to sickle cell patients in steady state and controls

The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance

INTRODUCTION Investment in Africa over the past year with regard to severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) sequencing has led to a massive increase in the number of sequences, which, to date, exceeds 100,000 sequences generated to track the pandemic on the continent. These sequences have profoundly affected how public health officials in Africa have navigated the COVID-19 pandemic. RATIONALE We demonstrate how the first 100,000 SARS-CoV-2 sequences from Africa have helped monitor the epidemic on the continent, how genomic surveillance expanded over the course of the pandemic, and how we adapted our sequencing methods to deal with an evolving virus. Finally, we also examine how viral lineages have spread across the continent in a phylogeographic framework to gain insights into the underlying temporal and spatial transmission dynamics for several variants of concern (VOCs). RESULTS Our results indicate that the number of countries in Africa that can sequence the virus within their own borders is growing and that this is coupled with a shorter turnaround time from the time of sampling to sequence submission. Ongoing evolution necessitated the continual updating of primer sets, and, as a result, eight primer sets were designed in tandem with viral evolution and used to ensure effective sequencing of the virus. The pandemic unfolded through multiple waves of infection that were each driven by distinct genetic lineages, with B.1-like ancestral strains associated with the first pandemic wave of infections in 2020. Successive waves on the continent were fueled by different VOCs, with Alpha and Beta cocirculating in distinct spatial patterns during the second wave and Delta and Omicron affecting the whole continent during the third and fourth waves, respectively. Phylogeographic reconstruction points toward distinct differences in viral importation and exportation patterns associated with the Alpha, Beta, Delta, and Omicron variants and subvariants, when considering both Africa versus the rest of the world and viral dissemination within the continent. Our epidemiological and phylogenetic inferences therefore underscore the heterogeneous nature of the pandemic on the continent and highlight key insights and challenges, for instance, recognizing the limitations of low testing proportions. We also highlight the early warning capacity that genomic surveillance in Africa has had for the rest of the world with the detection of new lineages and variants, the most recent being the characterization of various Omicron subvariants. CONCLUSION Sustained investment for diagnostics and genomic surveillance in Africa is needed as the virus continues to evolve. This is important not only to help combat SARS-CoV-2 on the continent but also because it can be used as a platform to help address the many emerging and reemerging infectious disease threats in Africa. In particular, capacity building for local sequencing within countries or within the continent should be prioritized because this is generally associated with shorter turnaround times, providing the most benefit to local public health authorities tasked with pandemic response and mitigation and allowing for the fastest reaction to localized outbreaks. These investments are crucial for pandemic preparedness and response and will serve the health of the continent well into the 21st century

Impact of Zinc Oxide Nanoparticles Amended Organic Manure on Arachis hypogaea Growth Response and Rhizosphere Bacterial Community

The effect of zinc oxide nanoparticle-organic manure amended ultisol and loam soils on plant growth response and rhizosphere bacterial community of peanut (Arachis hypogaea) was evaluated using standard methods under greenhouse conditions. Results indicate germination rates ranged between 30 and 100% in the amended soils compared to 50 and 70% in the controls. ZnO nanoparticles exerted concentration-dependent and varying effects on the plant root and shoot lengths, weights, nodules and pod formation in the two soil types. Heterotrophic bacterial counts ranged from 7.21 ± 0.51 to 7.38 ± 0.5 Log10CFUg-1 in the amended ultisol and 6.99 ± 0.55 Log10CFUg-1 in the control with a log reduction to 6.70 ± 0.39 Log10CFUg-1 in 500 mgkg⁻¹ ZnO spiked soil. Counts in the amended loam soil ranged between 6.59 ± 0.48 and 7.22 ± 0.41 Log10CFUg-1 relative to 6.80 ± 0.58 Log10CFUg-1 in the control. ZnO induced concentration-dependent effect on oxygen uptake rate relative to the controls. The organisms were members of the genera Lactobacillus, Pseudomonas, Bacillus, Rhizobium, Xanthobacter, Enterobacter, Citrobacter, Nitrosomonas and Agromyces. ZnO nanoparticle exerted concentration-dependent stimulatory and inhibitory effects on the plant growth response, oxygen uptake rate and induced temporal shifts in soil microbial abundance. It is challenging to generalize a consistent response of the plant or microorganisms because ZnO nanoparticles interacted with A. hypogaea and soil bacterial community in ways that differ in the ultisol and loam soil