283 research outputs found
Does Logarithm Transformation of Microarray Data Affect Ranking Order of Differentially Expressed Genes?
A common practice in microarray analysis is to transform the microarray raw
data (light intensity) by a logarithmic transformation, and the justification
for this transformation is to make the distribution more symmetric and
Gaussian-like. Since this transformation is not universally practiced in all
microarray analysis, we examined whether the discrepancy of this treatment of
raw data affect the "high level" analysis result. In particular, whether the
differentially expressed genes as obtained by -test, regularized t-test, or
logistic regression have altered rank orders due to presence or absence of the
transformation. We show that as much as 20%--40% of significant genes are
"discordant" (significant only in one form of the data and not in both),
depending on the test being used and the threshold value for claiming
significance. The t-test is more likely to be affected by logarithmic
transformation than logistic regression, and regularized -test more affected
than t-test. On the other hand, the very top ranking genes (e.g. up to top
20--50 genes, depending on the test) are not affected by the logarithmic
transformation.Comment: submitted to IEEE/EMBS Conference'0
Giant and tunable valley degeneracy splitting in MoTe2
Monolayer transition-metal dichalcogenides possess a pair of degenerate
helical valleys in the band structure that exhibit fascinating optical valley
polarization. Optical valley polarization, however, is limited by carrier
lifetimes of these materials. Lifting the valley degeneracy is therefore an
attractive route for achieving valley polarization. It is very challenging to
achieve appreciable valley degeneracy splitting with applied magnetic field. We
propose a strategy to create giant splitting of the valley degeneracy by
proximity-induced Zeeman effect. As a demonstration, our first principles
calculations of monolayer MoTe on a EuO substrate show that valley
splitting over 300 meV can be generated. The proximity coupling also makes
interband transition energies valley dependent, enabling valley selection by
optical frequency tuning in addition to circular polarization. The valley
splitting in the heterostructure is also continuously tunable by rotating
substrate magnetization. The giant and tunable valley splitting adds a readily
accessible dimension to the valley-spin physics with rich and interesting
experimental consequences, and offers a practical avenue for exploring device
paradigms based on the intrinsic degrees of freedom of electrons.Comment: 8 pages, 5 figures, 1 tabl
Computational illumination for high-speed in vitro Fourier ptychographic microscopy
We demonstrate a new computational illumination technique that achieves large
space-bandwidth-time product, for quantitative phase imaging of unstained live
samples in vitro. Microscope lenses can have either large field of view (FOV)
or high resolution, not both. Fourier ptychographic microscopy (FPM) is a new
computational imaging technique that circumvents this limit by fusing
information from multiple images taken with different illumination angles. The
result is a gigapixel-scale image having both wide FOV and high resolution,
i.e. large space-bandwidth product (SBP). FPM has enormous potential for
revolutionizing microscopy and has already found application in digital
pathology. However, it suffers from long acquisition times (on the order of
minutes), limiting throughput. Faster capture times would not only improve
imaging speed, but also allow studies of live samples, where motion artifacts
degrade results. In contrast to fixed (e.g. pathology) slides, live samples are
continuously evolving at various spatial and temporal scales. Here, we present
a new source coding scheme, along with real-time hardware control, to achieve
0.8 NA resolution across a 4x FOV with sub-second capture times. We propose an
improved algorithm and new initialization scheme, which allow robust phase
reconstruction over long time-lapse experiments. We present the first FPM
results for both growing and confluent in vitro cell cultures, capturing videos
of subcellular dynamical phenomena in popular cell lines undergoing division
and migration. Our method opens up FPM to applications with live samples, for
observing rare events in both space and time
Efficient microwave-to-optical conversion using Rydberg atoms
We demonstrate microwave-to-optical conversion using six-wave mixing in
Rb atoms where the microwave field couples to two atomic Rydberg states,
and propagates collinearly with the converted optical field. We achieve a
photon conversion efficiency of ~5% in the linear regime of the converter. In
addition, we theoretically investigate all-resonant six-wave mixing and outline
a realistic experimental scheme for reaching efficiencies greater than 60%
KINEMATICAL RESEARCH ON HURDLE CLEARANCE TECHNIQUES OF ELITE CHINESE ATHLETE IN 100M HURDLES
INTRODUCTION: Although Jing Liu was the champion of women’s 100m Hurdle in 2007 Asian Games, the performance did not get the level of the world elite athletes. This investigation was conducted to find the technique defects and thus to serve athletic training through kinematical analysis to hurdle clearance techniques of Jing Liu
KINEMATICAL RESEARCH ON 407C OF ELITE CHINESE MALE 3-M SPRINGBOARD DIVERS
INTRODUCTION: Diving is a dominant event of China in the 21th century. This research is to find some common features in kinematical parameters of elite diving athletes and thus to serve athlete training
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