7 research outputs found
Laugh-aware virtual agent and its impact on user amusement
In this paper we present a complete interactive system enabled to detect human laughs and respond appropriately, by integrating the information of the human behavior and the context. Furthermore, the impact of our autonomous laughter-aware agent on the humor experience of the user and interaction between user and agent is evaluated by subjective and objective means. Preliminary results show that the laughter-aware agent increases the humor experience (i.e., felt amusement of the user and the funniness rating of the film clip), and creates the notion of a shared social experience, indicating that the agent is useful to elicit positive humor-related affect and emotional contagion
Differential Modes of Peptide Binding onto Replicative Sliding Clamps from Various Bacterial Origins
Bacterial sliding clamps are molecular
hubs that interact with
many proteins involved in DNA metabolism through their binding, via
a conserved peptidic sequence, into a universally conserved pocket.
This interacting pocket is acknowledged as a potential molecular target
for the development of new antibiotics. We previously designed short
peptides with an improved affinity for the Escherichia
coli binding pocket. Here we show that these peptides
differentially interact with other bacterial clamps, despite the fact
that all pockets are structurally similar. Thermodynamic and modeling
analyses of the interactions differentiate between two categories
of clamps: group I clamps interact efficiently with our designed peptides
and assemble the Escherichia coli and
related orthologs clamps, whereas group II clamps poorly interact
with the same peptides and include Bacillus subtilis and other Gram-positive clamps. These studies also suggest that
the peptide binding process could occur via different mechanisms,
which depend on the type of clamp
Peptide-Based Covalent Inhibitors Bearing Mild Electrophiles to Target a Conserved His Residue of the Bacterial Sliding Clamp
Peptide-based covalent
inhibitors targeted to nucleophilic protein
residues have recently emerged as new modalities to target proteināprotein
interactions (PPIs) as they may provide some benefits over more classic
competitive inhibitors. Covalent inhibitors are generally targeted
to cysteine, the most intrinsically reactive amino acid residue, and
to lysine, which is more abundant at the surface of proteins but much
less frequently to histidine. Herein, we report the structure-guided
design of targeted covalent inhibitors (TCIs) able to bind covalently
and selectively to the bacterial sliding clamp (SC), by reacting with
a well-conserved histidine residue located on the edge of the peptide-binding
pocket. SC is an essential component of the bacterial DNA replication
machinery, identified as a promising target for the development of
new antibacterial compounds. Thermodynamic and kinetic analyses of
ligands bearing different mild electrophilic warheads confirmed the
higher efficiency of the chloroacetamide compared to Michael acceptors.
Two high-resolution X-ray structures of covalent inhibitorāSC
adducts were obtained, revealing the canonical orientation of the
ligand and details of covalent bond formation with histidine. Proteomic
studies were consistent with a selective SC engagement by the chloroacetamide-based
TCI. Finally, the TCI of SC was substantially more active than the
parent noncovalent inhibitor in an in vitro SC-dependent DNA synthesis
assay, validating the potential of the approach to design covalent
inhibitors of proteināprotein interactions targeted to histidine
Peptide-Based Covalent Inhibitors Bearing Mild Electrophiles to Target a Conserved His Residue of the Bacterial Sliding Clamp
Peptide-based covalent
inhibitors targeted to nucleophilic protein
residues have recently emerged as new modalities to target proteināprotein
interactions (PPIs) as they may provide some benefits over more classic
competitive inhibitors. Covalent inhibitors are generally targeted
to cysteine, the most intrinsically reactive amino acid residue, and
to lysine, which is more abundant at the surface of proteins but much
less frequently to histidine. Herein, we report the structure-guided
design of targeted covalent inhibitors (TCIs) able to bind covalently
and selectively to the bacterial sliding clamp (SC), by reacting with
a well-conserved histidine residue located on the edge of the peptide-binding
pocket. SC is an essential component of the bacterial DNA replication
machinery, identified as a promising target for the development of
new antibacterial compounds. Thermodynamic and kinetic analyses of
ligands bearing different mild electrophilic warheads confirmed the
higher efficiency of the chloroacetamide compared to Michael acceptors.
Two high-resolution X-ray structures of covalent inhibitorāSC
adducts were obtained, revealing the canonical orientation of the
ligand and details of covalent bond formation with histidine. Proteomic
studies were consistent with a selective SC engagement by the chloroacetamide-based
TCI. Finally, the TCI of SC was substantially more active than the
parent noncovalent inhibitor in an in vitro SC-dependent DNA synthesis
assay, validating the potential of the approach to design covalent
inhibitors of proteināprotein interactions targeted to histidine