620 research outputs found
Spatial Organization in the Reaction A + B --> inert for Particles with a Drift
We describe the spatial structure of particles in the (one dimensional)
two-species annihilation reaction A + B --> 0, where both species have a
uniform drift in the same direction and like species have a hard core
exclusion. For the case of equal initial concentration, at long times, there
are three relevant length scales: the typical distance between similar
(neighboring) particles, the typical distance between dissimilar (neighboring)
particles, and the typical size of a cluster of one type of particles. These
length scales are found to be generically different than that found for
particles without a drift.Comment: 10 pp of gzipped uuencoded postscrip
Towards a model for protein production rates
In the process of translation, ribosomes read the genetic code on an mRNA and
assemble the corresponding polypeptide chain. The ribosomes perform discrete
directed motion which is well modeled by a totally asymmetric simple exclusion
process (TASEP) with open boundaries. Using Monte Carlo simulations and a
simple mean-field theory, we discuss the effect of one or two ``bottlenecks''
(i.e., slow codons) on the production rate of the final protein. Confirming and
extending previous work by Chou and Lakatos, we find that the location and
spacing of the slow codons can affect the production rate quite dramatically.
In particular, we observe a novel ``edge'' effect, i.e., an interaction of a
single slow codon with the system boundary. We focus in detail on ribosome
density profiles and provide a simple explanation for the length scale which
controls the range of these interactions.Comment: 8 pages, 8 figure
Reconstruction on trees and spin glass transition
Consider an information source generating a symbol at the root of a tree
network whose links correspond to noisy communication channels, and
broadcasting it through the network. We study the problem of reconstructing the
transmitted symbol from the information received at the leaves. In the large
system limit, reconstruction is possible when the channel noise is smaller than
a threshold.
We show that this threshold coincides with the dynamical (replica symmetry
breaking) glass transition for an associated statistical physics problem.
Motivated by this correspondence, we derive a variational principle which
implies new rigorous bounds on the reconstruction threshold. Finally, we apply
a standard numerical procedure used in statistical physics, to predict the
reconstruction thresholds in various channels. In particular, we prove a bound
on the reconstruction problem for the antiferromagnetic ``Potts'' channels,
which implies, in the noiseless limit, new results on random proper colorings
of infinite regular trees.
This relation to the reconstruction problem also offers interesting
perspective for putting on a clean mathematical basis the theory of glasses on
random graphs.Comment: 34 pages, 16 eps figure
Partially asymmetric exclusion models with quenched disorder
We consider the one-dimensional partially asymmetric exclusion process with
random hopping rates, in which a fraction of particles (or sites) have a
preferential jumping direction against the global drift. In this case the
accumulated distance traveled by the particles, x, scales with the time, t, as
x ~ t^{1/z}, with a dynamical exponent z > 0. Using extreme value statistics
and an asymptotically exact strong disorder renormalization group method we
analytically calculate, z_{pt}, for particlewise (pt) disorder, which is argued
to be related to the dynamical exponent for sitewise (st) disorder as
z_{st}=z_{pt}/2. In the symmetric situation with zero mean drift the particle
diffusion is ultra-slow, logarithmic in time.Comment: 4 pages, 3 figure
Effect of a columnar defect on the shape of slow-combustion fronts
We report experimental results for the behavior of slow-combustion fronts in
the presence of a columnar defect with excess or reduced driving, and compare
them with those of mean-field theory. We also compare them with simulation
results for an analogous problem of driven flow of particles with hard-core
repulsion (ASEP) and a single defect bond with a different hopping probability.
The difference in the shape of the front profiles for excess vs. reduced
driving in the defect, clearly demonstrates the existence of a KPZ-type of
nonlinear term in the effective evolution equation for the slow-combustion
fronts. We also find that slow-combustion fronts display a faceted form for
large enough excess driving, and that there is a corresponding increase then in
the average front speed. This increase in the average front speed disappears at
a non-zero excess driving in agreement with the simulated behavior of the ASEP
model.Comment: 7 pages, 7 figure
Driven Lattice Gases with Quenched Disorder: Exact Results and Different Macroscopic Regimes
We study the effect of quenched spatial disorder on the steady states of
driven systems of interacting particles. Two sorts of models are studied:
disordered drop-push processes and their generalizations, and the disordered
asymmetric simple exclusion process. We write down the exact steady-state
measure, and consequently a number of physical quantities explicitly, for the
drop-push dynamics in any dimensions for arbitrary disorder. We find that three
qualitatively different regimes of behaviour are possible in 1- disordered
driven systems. In the Vanishing-Current regime, the steady-state current
approaches zero in the thermodynamic limit. A system with a non-zero current
can either be in the Homogeneous regime, chracterized by a single macroscopic
density, or the Segregated-Density regime, with macroscopic regions of
different densities. We comment on certain important constraints to be taken
care of in any field theory of disordered systems.Comment: RevTex, 17pages, 18 figures included using psfig.st
Two-Species Annihilation with Drift: A Model with Continuous Concentration-Decay Exponents
We propose a model for diffusion-limited annihilation of two species, or , where the motion of the particles is subject to a drift. For equal
initial concentrations of the two species, the density follows a power-law
decay for large times. However, the decay exponent varies continuously as a
function of the probability of which particle, the hopping one or the target,
survives in the reaction. These results suggest that diffusion-limited
reactions subject to drift do not fall into a limited number of universality
classes.Comment: 10 pages, tex, 3 figures, also available upon reques
Self Organization and a Dynamical Transition in Traffic Flow Models
A simple model that describes traffic flow in two dimensions is studied. A
sharp {\it jamming transition } is found that separates between the low density
dynamical phase in which all cars move at maximal speed and the high density
jammed phase in which they are all stuck. Self organization effects in both
phases are studied and discussed.Comment: 6 pages, 4 figure
Dynamical Phase Transition in One Dimensional Traffic Flow Model with Blockage
Effects of a bottleneck in a linear trafficway is investigated using a simple
cellular automaton model. Introducing a blockage site which transmit cars at
some transmission probability into the rule-184 cellular automaton, we observe
three different phases with increasing car concentration: Besides the free
phase and the jam phase, which exist already in the pure rule-184 model, the
mixed phase of these two appears at intermediate concentration with
well-defined phase boundaries. This mixed phase, where cars pile up behind the
blockage to form a jam region, is characterized by a constant flow. In the
thermodynamic limit, we obtain the exact expressions for several characteristic
quantities in terms of the car density and the transmission rate. These
quantities depend strongly on the system size at the phase boundaries; We
analyse these finite size effects based on the finite-size scaling.Comment: 14 pages, LaTeX 13 postscript figures available upon
request,OUCMT-94-
Time-dependent correlation functions in a one-dimensional asymmetric exclusion process
We study a one-dimensional anisotropic exclusion process describing particles
injected at the origin, moving to the right on a chain of sites and being
removed at the (right) boundary. We construct the steady state and compute the
density profile, exact expressions for all equal-time n-point density
correlation functions and the time-dependent two-point function in the steady
state as functions of the injection and absorption rates. We determine the
phase diagram of the model and compare our results with predictions from
dynamical scaling and discuss some conjectures for other exclusion models.Comment: LATEX-file, 32 pages, Weizmann preprint WIS/93/01/Jan-P
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