9 research outputs found
Genomic Diversity and Introgression in O. sativa Reveal the Impact of Domestication and Breeding on the Rice Genome
- Author
- A Sasaki
- A Shomura
- AJ Garris
- AJ Garris
- AL Caicedo
- AM McClung
- Andy Reynolds
- Anna McClung
- BC Couch
- BS Weir
- BS Weir
- C Fan
- Carlos D. Bustamante
- Chih-Wei Tung
- CN Bollich
- CN Bollich
- D Falush
- DJ Mackill
- ES Buckler
- F Lin
- FA Feltus
- G Second
- Georgia Eizenga
- GL Wang
- GS Khush
- GS Khush
- GS Khush
- GT Bryan
- H Agrama
- H Gao
- H Iwata
- I Ashikawa
- J Felsenstein
- J Ni
- J Yu
- JC Glaszmann
- Jennifer Kimball
- JK Pritchard
- JW Gibbons
- K Gravois
- K Zhao
- KA Mather
- KAK Moldenhauer
- KAK Moldenhauer
- Keyan Zhao
- KL McNally
- L Liu
- L Tan
- LMT Bradbury
- M Yano
- M-H Chen
- MA Fitzgerald
- Mark Wright
- MD McMullen
- Md. Liakat Ali
- MH Wright
- Michael Kovach
- MJ Aranzana
- MJ Kovach
- MJ Kovach
- MT Sweeney
- MW Smith
- N Rostoks
- N Takano-Kai
- P Hedden
- Pawel Michalak
- Q Zhang
- R Waugh
- S Konishi
- S Qu
- S Rakshit
- S Wright
- S Yamanaka
- S-K Lee
- SD Linscombe
- SJ Kim
- Susan R. McCouch
- T Kashiwagi
- T-T Chang
- W Spielmeyer
- W Yan
- W Yan
- Wricha Tyagi
- X Huang
- X-J Song
- Y Jia
- Y Jia
- Y Jia
- Z Song
- Z-X Wang
- ZY Wang
- ZY Wang
- Publication venue
- Public Library of Science
- Publication date
- 01/05/2010
- Field of study
The domestication of Asian rice (Oryza sativa) was a complex process punctuated by episodes of introgressive hybridization among and between subpopulations. Deep genetic divergence between the two main varietal groups (Indica and Japonica) suggests domestication from at least two distinct wild populations. However, genetic uniformity surrounding key domestication genes across divergent subpopulations suggests cultural exchange of genetic material among ancient farmers.In this study, we utilize a novel 1,536 SNP panel genotyped across 395 diverse accessions of O. sativa to study genome-wide patterns of polymorphism, to characterize population structure, and to infer the introgression history of domesticated Asian rice. Our population structure analyses support the existence of five major subpopulations (indica, aus, tropical japonica, temperate japonica and GroupV) consistent with previous analyses. Our introgression analysis shows that most accessions exhibit some degree of admixture, with many individuals within a population sharing the same introgressed segment due to artificial selection. Admixture mapping and association analysis of amylose content and grain length illustrate the potential for dissecting the genetic basis of complex traits in domesticated plant populations.Genes in these regions control a myriad of traits including plant stature, blast resistance, and amylose content. These analyses highlight the power of population genomics in agricultural systems to identify functionally important regions of the genome and to decipher the role of human-directed breeding in refashioning the genomes of a domesticated species
Iron Behaving Badly: Inappropriate Iron Chelation as a Major Contributor to the Aetiology of Vascular and Other Progressive Inflammatory and Degenerative Diseases
- Author
- A Abbott
- A Abou-Raya
- A Aljandali
- A Ambesi-Impiombato
- A Aydin
- A Balcerczyk
- A Besarab
- A Brzezinski
- A Campbell
- A Carrillo-Vico
- A Cavalli
- A Chattopadhyay
- A Chattopadhyay
- A Cherubini
- A Dey
- A Doms
- A Donovan
- A Donovan
- A Dávalos
- A Gaeta
- A Garny
- A Gnjec
- A Gomes
- A Gopalakrishnan
- A Hald
- A Henney
- A Hirayama
- A Hoffmann
- A Huber
- A Hugman
- A Iannetti
- A Ide-Ektessabi
- A Jacobs
- A Jeyabalan
- A Kahvejian
- A Karrar
- A Kasztler
- A Kibel
- A Kocyigit
- A Kotha
- A Kumral
- A Lass
- A Lecube
- A Lewén
- A Lotery
- A Maggio
- A Malek
- A Malik
- A Mantovani
- A Matsuzawa
- A Mitra
- A Monge
- A Murakami
- A Murakami
- A Murakami
- A Murakami
- A Mutti
- A Nijnik
- A Nunomura
- A Nunomura
- A Patt
- A Persson
- A Pietrangelo
- A Piga
- A Pirat
- A Post
- A Pradhan
- A Protti
- A Rattner
- A Ravati
- A Rehman
- A Reynolds
- A Richmond
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- A Roetto
- A Rostom
- A Rumbold
- A Russo
- A Rötig
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- A Saltelli
- A Sandek
- A Sassano
- A Scalbert
- A Scalbert
- A Scalbert
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- A Smahi
- A Sola
- A Stintzi
- A Szewczyk
- A Taguchi
- A Tedgui
- A Terman
- A Terman
- A Terman
- A Undas
- A Virdis
- A Wagner
- A Wagner
- A Wagner
- A Wagner
- A Wojas-Pelc
- A Wong
- A Xu
- A Yoritaka
- A Yoshimura
- A-L Barabási
- AA Andreadis
- AA Borisy
- AA Farooqui
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- AA Qutub
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- AB Parsons
- AB Parsons
- AB Thompson
- AB Thomson
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- AC Bharti
- AC Cave
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- Ad hoc committee on systemic lupus erythematosus response criteria for fatigue
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- VR Gordeuk
- VR Taqueti
- W Aerbajinai
- W Breuer
- W Craelius
- W Davis Jr
- W Dichtl
- W Dröge
- W Dröge
- W Hu
- W Kalt
- W Kong
- W Li
- W Ma
- W Mair
- W Makropoulos
- W Ondo
- W Tungwiwat
- WA Cass
- WB Dunn
- WB Ershler
- WB Kannel
- WI Leong
- WJ Jo
- WK Adkins
- WL Neeley
- WM Campana
- WR Farwell
- WR Markesbery
- WR Markesbery
- WS Jeong
- WS Yang
- WW Huber
- WW Wong
- WY Ong
- X Chen
- X Chen
- X He
- X Huang
- X Huang
- X Huang
- X Li
- X Zhang
- X Zhu
- X Zhu
- XD Huang
- XJ Li
- XM Yuan
- XM Yuan
- XP Huang
- Y Almog
- Y Avramovich-Tirosh
- Y Bao
- Y Bdolah
- Y Chen
- Y Christen
- Y Curin
- Y Deugnier
- Y Deugnier
- Y Engin-Üstün
- Y Ge
- Y Gilgun-Sherki
- Y Haruna
- Y Honda
- Y Hua
- Y Ikeda
- Y Jiao
- Y Jung
- Y Ke
- Y Ke
- Y Kohgo
- Y Kohgo
- Y Levites
- Y Li
- Y Okatani
- Y Okatani
- Y Sai
- Y Sai
- Y Sun
- Y Takada
- Y Wang
- Y Wang
- Y Wei
- Y Wei
- Y Wu
- Y Wu
- Y Zhang
- Y Zhang
- Y Zhang
- Y Zhao
- Y Zheng
- YE Henrotin
- YF Chu
- YH Lee
- YH Suh
- YH Wei
- YJ Surh
- YJ Surh
- YJ Surh
- YK Wu
- YM Kim
- YS Keum
- YS Sohn
- YX Ma
- YZ Fang
- Z Cai
- Z Cai
- Z Cheng
- Z Pei
- Z Serdar
- Z Tong
- Z Tong
- Z Yu
- Z Zhang
- ZD Liu
- ZD Liu
- ZE Karanjawala
- ZE Suntres
- ZI Cabantchik
- ZZ Chong
- ZZ Chong
- Publication venue
- Publication date
- 09/08/2008
- Field of study
The production of peroxide and superoxide is an inevitable consequence of
aerobic metabolism, and while these particular "reactive oxygen species" (ROSs)
can exhibit a number of biological effects, they are not of themselves
excessively reactive and thus they are not especially damaging at physiological
concentrations. However, their reactions with poorly liganded iron species can
lead to the catalytic production of the very reactive and dangerous hydroxyl
radical, which is exceptionally damaging, and a major cause of chronic
inflammation. We review the considerable and wide-ranging evidence for the
involvement of this combination of (su)peroxide and poorly liganded iron in a
large number of physiological and indeed pathological processes and
inflammatory disorders, especially those involving the progressive degradation
of cellular and organismal performance. These diseases share a great many
similarities and thus might be considered to have a common cause (i.e.
iron-catalysed free radical and especially hydroxyl radical generation). The
studies reviewed include those focused on a series of cardiovascular, metabolic
and neurological diseases, where iron can be found at the sites of plaques and
lesions, as well as studies showing the significance of iron to aging and
longevity. The effective chelation of iron by natural or synthetic ligands is
thus of major physiological (and potentially therapeutic) importance. As
systems properties, we need to recognise that physiological observables have
multiple molecular causes, and studying them in isolation leads to inconsistent
patterns of apparent causality when it is the simultaneous combination of
multiple factors that is responsible. This explains, for instance, the
decidedly mixed effects of antioxidants that have been observed, etc...Comment: 159 pages, including 9 Figs and 2184 reference
Large-scale rewiring of innate immunity circuitry and microRNA regulation during initial rice blast infection
- Author
- A Mustafiz
- A Pitzschke
- AC Mallory
- AF Bent
- B Valent
- B Yuan
- BF Quirino
- BJ DeYoung
- C Padmanabhan
- C Trapnell
- C Zhai
- D Baek
- D Gibbings
- D Sharma
- D Staiger
- D Zhang
- DH Jeong
- DP Bartel
- DW Huang
- E Ballini
- F Li
- F Rapaport
- F Xu
- FM Ausubel
- GJ Dennis
- GT Bryan
- H Jin
- I Ashikawa
- J Choi
- J Liu
- J Zhai
- JK Seo
- JM Elmore
- L Hua
- L Li
- L Navarro
- M Gowda
- M Hackenberg
- MD Robinson
- MI Hood
- MW Jones-Rhoades
- NJ Talbot
- PJ Kersey
- PV Shivaprasad
- RJ Kinsella
- RV Mural
- S Anders
- S Goritschnig
- S Katiyar-Agarwal
- S Kim
- S Lu
- ST Chisholm
- W Zhang
- W Zhang
- XF He
- Y Li
- YC Zhang
- Publication venue
- 'Springer Science and Business Media LLC'
- Publication date
- Field of study
Epigenetic diversity of Saccharum spp. accessions assessed by methylation-sensitive amplification polymorphism (MSAP)
- Author
- A Ali
- A D'Hont
- A Pérez-Figueroa
- AJ Afzal
- B Schulz
- BT Hofmeister
- C Alonso
- C Grativol
- CP Lei
- CU Stirnimann
- D Schübeler
- DA Earl
- DL Ludwig
- EW Gachomo
- F Guarino
- G Arceneaux
- G Evanno
- H Zhang
- I Ashikawa
- J Daniels
- J Fulneček
- J Zhang
- JA Da Silva
- JE Irvine
- JHMB Francischini
- JI Gent
- JK Pritchard
- JS Brown
- JS Seo
- K Aitken
- K Akimoto
- K Ma
- KF Ma
- KS Aitken
- L Excoffier
- L Ji
- M Abuzayed
- M Ong-Abdullah
- MF Fraga
- MLA Lima
- N Li
- N Saitou
- NM Springer
- O Garsmeur
- P Singh
- P Vos
- PL Luu
- PP Sahu
- Q Song
- RB Singh
- RC Team
- S Rombauts
- S Wright
- SN Nayak
- TK To
- W Xu
- XL Liu
- Publication venue
- 'Springer Science and Business Media LLC'
- Publication date
- Field of study
Use of molecular markers in identification and characterization of resistance to rice blast in India
- Author
- A Mahender
- AB Shikari
- AK Singh
- Aravindan S.
- B Divya
- BK Babu
- C Wang
- D Chen
- D Tian
- D Zhu
- DA Earl
- E Elert
- FJ CORREA-VICTORIA
- G Das
- G Evanno
- GS Khush
- H. N. Shubudhi
- HH Flor
- I Ashikawa
- J Doyle
- J Imam
- J Imam
- J Liu
- JK Pritchard
- JL Fuentes
- JS Jeon
- JY Yang
- K Hayashi
- K Lui
- KD Ingole
- M RoyChowdhury
- Manas Kumar Bag
- Manoj Kumar Yadav
- Mayabini Jena
- P Skamnioti
- PH Sneath
- PJ Bradbury
- PK Gouda
- R Johnson
- RO Peakall
- RS Zeigler
- RS Zeigler
- S Ashkani
- S Hittalmani
- S Qu
- Sanghamitra Samantaray
- SH Ou
- Sushmita Munda
- TC Borba
- Totan Adak
- TR Sharma
- TR Sharma
- Umakanta Ngangkham
- W Zheng
- Y Jia
- Y Jia
- Y Liu
- Y Yang
- Zonghua Wang
- Publication venue
- 'Public Library of Science (PLoS)'
- Publication date
- Field of study
Epigenetic Diversity of Clonal White Poplar (Populus alba L.) Populations: Could Methylation Support the Success of Vegetative Reproduction Strategy?
- Author
- A Cicatelli
- A Cicatelli
- A Kovarik
- A Pérez-Figueroa
- A Trewavas
- AB Nicotra
- Angela Cicatelli
- B Fussi
- B Fussi
- Berthold Heinze
- C Darwin
- C Lantuejoul
- CF Lira-Medeiros
- CJ Peterson
- DI Dickmann
- E Putiri
- E Teyssier
- F Medail
- Francesco Guarino
- G Brundu
- G Evanno
- G Guillot
- G Guillot
- Giuseppe Brundu
- H Saze
- I Ahuja
- I Ashikawa
- I Wagner
- JK Pritchard
- K Ma
- KF Ma
- KN Stölting
- L Excoffier
- L Excoffier
- L Santos-del-Blanco
- L Suter
- LE Young
- LN Lukens
- M Chen
- M Hauben
- M Labra
- M Labra
- M Labra
- M Thellier
- Massimo Labra
- ME Alvarez
- MJ Van Oosten
- MW Yaish
- N Myers
- O Morozova
- P Jaccard
- P Quézel
- P Vos
- QZ Du
- R Aina
- R Peakall
- RH Dowen
- RJ Petit
- RK Varshney
- ROD Peakall
- S Foret
- Stefano Castiglione
- T Wicker
- TP Chen
- V Chinnusamy
- V Latzel
- Y Michalakis
- Y Zhao
- Publication venue
- 'Public Library of Science (PLoS)'
- Publication date
- Field of study
Acute Radiation Effects
- Author
- A Bjornberg
- A Kligman
- A Sanya
- AA Leibow
- AD Goedeke
- AE Bogden
- AHE Marshall
- AJ Masley
- AJ Masley
- AM Jelliffe
- AW Oughterson
- B Shapiro
- BA Stoull
- BA Stoull
- BC Clark
- BH Ershoff
- CA Sondhaus
- CA Sondhaus
- CA Sondhaus
- CA Tobias
- CM Gurner
- CP Artz
- D Grahn
- DA Adams
- DK Sorensen
- DP Jacobus
- EL Saenger
- EM Johnson
- EP Cronkite
- EP Cronkite
- EP Cronkite
- F Kalz
- G Mathe
- G Mathe
- G Mathe
- GS Melville Jr.
- GV Dalrymple
- GV Dalrymple
- GV Dalrymple
- GV Dalrymple
- GV Dalrymple
- GV Dalrymple
- GV Dalrymple
- GW Newell
- H Balner
- H Feinman
- H Rosenkrantz
- HB Gerstner
- HJ Curtis
- HJ Curtis
- HJ Schaefer
- HJ Schaefer
- HL Haltern Van
- HT Meryman
- I Moskalev
- IR Lindsay
- J Billingham
- J Billingham
- J Doull
- J Hazel
- JA Holt
- JF Albright
- JF Thomson
- JH Marks
- JH Schulte
- JJ Nickson
- JK Ashikawa
- JL Lancker Van
- JL Modisette
- JR Maisin
- JW Degan
- JW Firor
- JW Haffner
- LE Hougton
- LH Hempelmann
- LM Shorvon
- LS Miller
- M Brucer
- M Brucer IV
- M Ingram
- MJ Ashwood-Smith
- MT Sproul
- N Oda
- NG Darenskaya
- OCA Scott
- P Bonet-Maury
- P Freier
- PL Morales
- RB Stoughton
- RB Stoughton
- RD Sweet
- RK Jones
- RK Wilson
- RL Straube
- S Glasstone
- S Warren
- SS Kurohara
- T Foelsche
- TL Shipman
- VA Balabukha
- VA Codiga
- VP Bond
- VP Bond
- WH Langham
- WL Gill
- WM Court-Brown
- WP Saylor
- WR Webber
- ZM Bacq
- Publication venue
- 'Springer Science and Business Media LLC'
- Publication date
- 01/01/1968
- Field of study
Mechanisms of Action of Phenolic Compounds in Olive
- Author
- Andjelkovic M
- Arlorio M
- Ashikawa JK
- Benavente-Garcia O
- Berliner JA
- Bosetti C
- Bosetti C
- Bosetti C
- Brenes M
- Brockbank EM
- Carluccio MA
- Cook NR
- Covas MI
- Covas MI
- Cronin-Fenton DP
- Dell'Agli M
- Fabiani R
- Fabiani R
- Fernandez-Bolanos J
- Franceschi S
- Gackowski D
- Gomez Caravaca AM
- Gonzalez-Santiago M
- Goodhart JF
- Gounelle H
- Gubb AS
- Guichard C
- Haloom Rafehi
- Harris RE
- Hennekens CH
- Henriksen T
- Hornstra G
- Horsley JS
- Karon JM
- Katan MB
- Katherine Ververis
- Keys A
- Keys A
- la Vecchia C
- Lala PK
- Lipworth L
- Lucas L
- Machowetz A
- Mahmud SM
- Manna C
- Manna C
- Marrugat J
- Marsilio V
- Mustafa A
- Nakahara W
- Novikova NA
- Pelucchi C
- Petroni A
- Petroni A
- Peyrot des Gachons C
- Rafehi H
- Rainis T
- Ramli US
- Ranalli A
- Riley FR
- Ross R
- Rotondi A
- Salami M
- Sassani A
- Steinberg D
- Stephenson WH
- Stevens FA
- Tom C. Karagiannis
- Toshima S
- Trichopoulou A
- Vane JR
- Vivancos M
- Wagner H
- Wallenfeldt K
- Zykova TA
- Publication venue
- 'Informa UK Limited'
- Publication date
- Field of study
Molecular breeding of rice for improved disease resistance, a review
- Author
- A Amante-Bordeos
- A Das
- A Delteil
- A Takahashi
- AD Amante
- AK Rai
- B Prasad
- B Yuan
- B Zhou
- BA McDonald
- BD Prasad
- C Lei
- C Mei
- C Wongsaprom
- C Zhai
- CM Vera Cruz
- D Qiu
- D Qiu
- D Yang
- DO Liu
- DX Chen
- EE Helliwell
- F Lin
- F Song
- G Liu
- G Liu
- G Sridevi
- G Zhang
- GL Wang
- GP Singh
- GS Khush
- GS Khush
- GT Bryan
- GX Tan
- H Bhasin
- H Huang
- H Uchimiya
- HX Yu
- HX Yuan
- I Ashikawa
- I Miyake
- I Ullah
- J Chen
- J Fu
- J Li
- J Shang
- JC Nelson
- JK Kim
- JM Shah
- JN Rush
- JP Suh
- K Datta
- K Tang
- KK Cheema
- KM Webb
- KY Gu
- KY Hayashi
- L Fu
- L Fu
- L Hua
- L Rahman
- L Willocquet
- LA Boyd
- M Coca
- M Coca
- MA Akhtar
- ML Shanti
- MR Chowdhury
- Mueen Alam Khan
- N Hayashi
- N Huang
- NJ Talbot
- NS Kottearachchi
- P Abbruscato
- P Lakshmanan
- P Li
- P Natrajkumar
- P Singh
- PK Gouda
- Q Xu
- R Adhipathi
- R Galhano
- R Nandakumar
- RN Patkar
- S Ashkani
- S Cesari
- S Chandler
- S Chen
- S Fukuoka
- S Gopalakrishnan
- S Ishiyama
- S Jha
- S Jha
- S Maruthasalam
- S Perumalsamy
- S Qu
- S Srinivasachary
- S Zuo
- SB Guo
- SD Tanksley
- SH Ou
- SK Lee
- SMA Shah
- SP Pandey
- T Kobayashi
- T Ram
- T Talas-Og˘ras
- T Terashima
- TW Mew
- TW Mew
- U Schaffrath
- V Channamallikarjuna
- W Pinta
- W Wei
- W Zhai
- WY Song
- X Chen
- X Chen
- X Chen
- X Liu
- X Pan
- X Peng
- X Sun
- X Wang
- XQ Liu
- XW Jin
- XY Sha
- Y Jia
- Y Koide
- Y Okuyama
- Y Tagami
- Y Wang
- YC Cho
- Z Tao
- Z Wang
- Z Xie
- ZK Li
- Publication venue
- 'Springer Science and Business Media LLC'
- Publication date
- Field of study