Loading Dynamics of a sliding DNA clamp

Sliding DNA clamps are loaded at a ss/dsDNA junction by a clamp loader that depends on ATP binding for clamp opening. Sequential ATP hydrolysis results in closure of the clamp so that it completely encircles and diffuses on dsDNA. We followed events during loading of an E. coli beta clamp in real time by using single-molecule FRET (smFRET). Three successive FRET states were retained for 0.3 s, 0.7 s, and 9 min: Hydrolysis of the first ATP molecule by the g clamp loader resulted in closure of the clamp in 0.3 s, and after 0.7 s in the closed conformation, the clamp was released to diffuse on the dsDNA for at least 9 min. An additional single-molecule polarization study revealed that the interfacial domain of the clamp rotated in plane by approximately 88 during clamp closure. The single-molecule polarization and FRET studies thus revealed the real-time dynamics of the ATP-hydrolysis-dependent 3D conformational change of the b clamp during loading at a ss/dsDNA junction.X1156Ysciescopu

Preparation of titanium dioxide (TiO<inf>2</inf>) from sludge produced by titanium tetrachloride (TiCl<inf>4</inf>) flocculation of wastewater

Sludge disposal is one of the most costly and environmentally problematic challenges of modern wastewater treatment worldwide. In this study, a new process was developed, which has a significant potential for lower cost of waste disposal, protection of the environment and public health, and yield of economically useful byproducts. Titanium oxide (TiO2), which is the most widely used metal oxide, was produced from the wastewater sludge generated by the flocculation of secondary wastewater with titanium tetrachloride (TiCl4). Detailed analyses were conducted to compare TiCl 4, ferric chloride (FeCl3), and aluminum sulfate (Al 2(SO4)3) flocculation. Removal of organic matter and different molecular sizes by Ti-salt flocculation was similar to that of the most widely used Fe- and Al-salt flocculation. The mean size of Ti-, Fe-, and Al-salt flocs was 47.5, 42.5, and 16.9 μm, respectively. The decantability of the settled flocs by TiCl4 coagulant was similar to that by FeCl3 coagulant and much higher than that of Al 2(SO4)3. The photocatalyst from wastewater (PFW) produced by TiCl4 flocculation was characterized by X-ray diffraction, BET surface area, scanning electron microscopy/energy dispersive X-ray, transmission electron microscopy, photocatalytic activity, and X-ray photoelectron spectroscopy. The resulting PFW was found to be superior to commercial TiO2 (P-25) in terms of photocatalytic activity and surface area. The PFW was also found to be mainly doped with C and P atoms. The atomic percentage of the PFW was TiO1.42C0.44P 0.14. © 2007 American Chemical Society

Preparation and characterisation of titanium dioxide produced from Ti-salt flocculated sludge in water treatment

During the past few years, titanium salts were investigated as alternative coagulants for the removal of organic matter of different molecular sizes in contaminated water. The flocculation efficiency of Ti-salt was comparable to those of FeCl3 and Al2(SO4)3 salts, commonly used coagulants. Incinerated sludge-TiO2 showed higher surface area and photocatalytic activity than commercially available TiO2. Metal-doped forms were produced by adding coagulant aids such as iron (Fe-), aluminium (Al-) and (Ca-) calcium salts during Ti-salt flocculation to increase pH. Ca- and Al- doped TiO2 showed very high photocatalytic activity compared to Fe-doped TiO2. When tested in a pilot scale plant for treatment of dye wastewater to check practical feasibility of the novel process, the removal ratio of the chemical oxygen demand was comparable to those of commonly used coagulants but the settling of sludge was faster. The TiO2 generated after sludge incineration showed a high photocatalytic activity for degradation of volatile organic compounds and increased the rate of hydrogen production by water photosplitting. TiCl4 coagulant and TiO2 produced from different water sources with different concentrations had low acute toxicity compared to heavy metals and commercial TiO2 when examined based on D. Magna mortality. This paper presents the production, characterisation and the photoactivity of TiO2 produced from Ti-salt flocculated sludge. Different case studies are discussed to highlighted recent advances in this field

Macroscopic invisibility cloaking of visible light

Invisibility cloaks, which used to be confined to the realm of fiction, have now been turned into a scientific reality thanks to the enabling theoretical tools of transformation optics and conformal mapping. Inspired by those theoretical works, the experimental realization of electromagnetic invisibility cloaks has been reported at various electromagnetic frequencies. All the invisibility cloaks demonstrated thus far, however, have relied on nano- or micro-fabricated artificial composite materials with spatially varying electromagnetic properties, which limit the size of the cloaked region to a few wavelengths. Here, we report the first realization of a macroscopic volumetric invisibility cloak constructed from natural birefringent crystals. The cloak operates at visible frequencies and is capable of hiding, for a specific light polarization, three-dimensional objects of the scale of centimetres and millimetres. Our work opens avenues for future applications with macroscopic cloaking devices

Visible light responsive titanium dioxide (TiO<inf>2</inf>)

Titanium dioxide (TiO2) is one of the most researched semiconductor oxides that has revolutionised technologies in the field of environmental purification and energy generation. It has found extensive applications in heterogenous photocatalysis for removing organic pollutants from air and water and also in hydrogen production from photocatalytic water-splitting. Its use is popular because of its low cost, low toxicity, high chemical and thermal stability, But one of the critical limitations of TiO 2 as photocatalyst is its poor response to visible light. Several attempts have been made to modify the surface and electronic structures of TiO2 to enhance its activity in the visible light region such as noble metal deposition, metal ion loading, cationic and anionic doping and sensitisation, Most of the results improved photocatalytic performance under visible light irradiation. This paper attempts to review and update some of the information on the TiO2 photocatalytic technology and its accomplishment towards visible light region

Crystal Structures of the structure-selective nuclease Mus81-Eme1 bound to flap DNA substrates

The Mus81-Eme1 complex is a structure-selective endonuclease with a critical role in the resolution of recombination intermediates during DNA repair after interstrand cross-links, replication fork collapse, or double-strand breaks. To explain the molecular basis of 3 &apos; flap substrate recognition and cleavage mechanism by Mus81-Eme1, we determined crystal structures of human Mus81-Eme1 bound to various flap DNA substrates. Mus81-Eme1 undergoes gross substrate-induced conformational changes that reveal two key features: (i) a hydrophobic wedge of Mus81 that separates pre- and post-nick duplex DNA and (ii) a 5 &apos; end binding pocket that hosts the 5 &apos; nicked end of post-nick DNA. These features are crucial for comprehensive protein-DNA interaction, sharp bending of the 3 &apos; flap DNA substrate, and incision strand placement at the active site. While Mus81-Eme1 unexpectedly shares several common features with members of the 5 &apos; flap nuclease family, the combined structural, biochemical, and biophysical analyses explain why Mus81-Eme1 preferentially cleaves 3 &apos; flap DNA substrates with 5 &apos; nicked ends.X11119Ysciescopu

Hydrogen production affected by Pt concentration on TiO <inf>2</inf> produced from the incineration of dye wastewater flocculated sludge using titanium tetrachloride

TiO 2 from the incineration of dye wastewater flocculated sludge using TiCl 4 coagulant was produced. Optimal catalyst amount and Pt-loading on TiO 2 were studied for the production of H 2 by photocatalytic reforming of methanol (6% vol.). On the other hand, BTSE (biologically treated sewage effluent) was flocculated using TiCl4 and produced sludge was incinerated to generate TiO 2 . TiO 2 was loaded with optimum Pt and added to the supernatant in a photocatalytic reactor to test the efficiency of using remaining organics as a “sacrificial reagent” for photocatalytic hydrogen production. Dissolved organic carbon (DOC) and molecular weight distribution (MWD) were measured for nanofiltration (NF) and TiCl 4 flocculation followed by photocatalysis. TiO 2 (from the incineration of BTSE flocculated sludge using TiCl4) was produced and loaded with 0.5% Pt. Results showed that the optimum concentration of TiO 2 (from dye wastewater) for H 2 production was 0.3 g/L, while the optimum amount of Pt was 0.5%. DOC and MWD removal was similar for the flocculation of BTSE followed by photocatalytic reaction and the NF process. Remaining organic compounds after flocculation could not be used as sacrificial reagent to induce H 2 production. Further investigations on studying the UV intensity and/or identifying organic/inorganic scavengers to inhibit H 2 production are underway. © 2010, Taylor & Francis Group, LLC

Evaluation of 3D printed PCL/PLGA/beta-TCP versus collagen membranes for guided bone regeneration in a beagle implant model

Here, we compared 3D-printed polycaprolactone/poly(lactic-co-glycolic acid)/beta-tricalcium phosphate (PCL/PLGA/beta-TCP) membranes with the widely used collagen membranes for guided bone regeneration (GBR) in beagle implant models. For mechanical property comparison in dry and wet conditions and cytocompatibility determination, we analyzed the rate and pattern of cell proliferation of seeded fibroblasts and preosteoblasts using the cell counting kit-8 assay and scanning electron microscopy. Osteogenic differentiation was verified using alizarin red S staining. At 8 weeks following implantation in vivo using beagle dogs, computed tomography and histological analyses were performed after sacrifice. Cell proliferation rates in vitro indicated that early cell attachment was higher in collagen than in PCL/PLGA/beta-TCP membranes; however, the difference subsided by day 7. Similar outcomes were found for osteogenic differentiation, with approximately 2.5 times greater staining in collagen than PCL/PLGA/beta-TCP, but without significant difference by day 14. In vivo, bone regeneration in the defect area, represented by new bone formation and bone-to-implant contact, paralleled those associated with collagen membranes. However, tensile testing revealed that whereas the PCL/PLGA/beta-TCP membrane mechanical properties were conserved in both wet and dry states, the tensile property of collagen was reduced by 99% under wet conditions. Our results demonstrate in vitro and in vivo that PCL/PLGA/beta-TCP membranes have similar levels of biocompatibility and bone regeneration as collagen membranes. In particular, considering that GBR is always applied to a wet environment (e.g. blood, saliva), we demonstrated that PCL/PLGA/beta-TCP membranes maintained their form more reliably than collagen membranes in a wet setting, confirming their appropriateness as a GBR membrane.11109Ysciescopu

Red green blue emissive lead sulfide quantum dots: heterogeneous synthesis and applications.

Visible emission colloidal quantum dots (QDs) have shown promise in optical and optoelectronic applications. These QDs are typically composed of relatively expensive elements in the form of indium, cadmium, and gallium since alternative candidate materials exhibiting similar properties are yet to be realized. Herein, for the first time, we report red green blue (RGB) photoluminescences with quantum yields of 18% from earth-abundant lead sulfide (PbS) QDs. The visible emissive property is mainly attributed to a high degree of crystallinity even for the extremely small QD sizes (1-3 nm), which is realized by employing a heterogeneous reaction methodology at high growth temperatures (>170 °C). We demonstrate that the proposed heterogeneous synthetic method can be extended to the synthesis of other metal chalcogenide QDs, such as zinc sulfide and zinc selenide, which are promising for future industrial applications. More importantly, benefiting from the enlarged band gaps, the as-prepared PbS solar cells show an impressive open circuit voltage (∼0.8 V) beyond that reported to date