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9 research outputs found
Markov models of the apo-MDM2 lid region reveal diffuse yet two-state binding dynamics and receptor poses for computational docking
Author
AM Razavi
B Han
+58Â more
BB Lao
C Li
C Zhan
CR Schwantes
D Shukla
D-W Li
DL Mobley
DT Moustakas
EF Pettersen
F Feixas
F Noé
F NĂĽske
G Perez-Hernandez
G Zhou
GA Pantelopulos
GR Bowman
GR Bowman
J Choi
J Michel
JA Bueren-Calabuig
JA Bueren-Calabuig
JA Kritzer
JC Fuller
JC Fuller
JD Chodera
JM Word
JR Wagner
K Sugase
KA Beauchamp
KJ Kohlhoff
KM ElSawy
L Boninsegna
L Chen
LK Henchey
LS Cheng
M Bista
M Fischer
M Liu
M Pazgier
M Shirts
PE Wright
PH Kussie
PT Lang
Q Qiao
RD Malmstrom
RE Amaro
RT McGibbon
S Baek
S Pronk
S Uhrinova
SA Showalter
SR Brozell
WJ Allen
Y Rew
Y Zhao
Y-S Lin
Z Guo
ZZ Brown
Publication venue
'Springer Science and Business Media LLC'
Publication date
Field of study
No full text
Crossref
Insight into the sequence-specific elements leading to increased DNA bending and ligase-mediated circularization propensity by antitumor trabectedin
Author
A Basu
A Chakraborty
+42Â more
A Gietl
A Mills
A Waterhouse
A Williamson
AA Salzberg
AK Larsen
C Cuevas
C Forni
CI Sainz-DĂaz
D Shore
DA Case
DR Roe
E Marco
F Battistini
F Grosso
GJ Aune
H Wang
HT Rube
I Ivani
J Gallego
J Li
JA Bueren-Calabuig
JA Maier
K Ogata
K Shi
KL Rinehart
M Sild
M Zewail-Foote
MD Lee
N Abe
P Li
PJ Dziubanska-Kusibab
R GarcĂa-Nieto
R Lavery
S Di Giandomenico
S Feuerhahn
S Lara-González
SA Harris
T Macke
T Zhou
TE Haran
W Su
Publication venue
'Springer Science and Business Media LLC'
Publication date
Field of study
No full text
Crossref
Trabectedin, a drug acting on both cancer cells and the tumour microenvironment
Author
A Hollebecque
A Le Cesne
+46Â more
A Mantovani
AB Herrero
BJ Monk
BZ Qian
C Cuevas
C Forni
C M Galmarini
CM Galmarini
D Friedman
DG Soares
E Charytonowicz
E Erba
F Gago
F Grosso
F Grosso
G Damia
G Damia
G Ferrandina
G Germano
G Germano
GJ Aune
JA Bueren-Calabuig
JM Del Campo
JW Pollard
LH Hurley
M D’Incalci
M D’Incalci
M D’Incalci
M Minuzzo
M Romano
M Tavecchio
MJ Bissell
N Badri
P Allavena
P Allavena
P Allavena
P Schoffski
PJ Grohar
PJ Grohar
PJ Grohar
R Sanfilippo
R Sanfilippo
S Di Giandomenico
S Feuerhahn
S Jin
Y Takebayashi
Publication venue
'Springer Science and Business Media LLC'
Publication date
Field of study
No full text
Crossref
Zinc-mediated conformational preselection mechanism in the allosteric control of DNA binding to the zinc transcriptional regulator (ZitR)
Author
A Grove
A Grove
+55Â more
D Bucher
D Hamelberg
D Hamelberg
D Llull
D Llull
DA Capdevila
DK Deochand
E Guarnera
E Guarnera
E Guarnera
E Guarnera
E Guarnera
E Morello
EM Panina
HM Berman
J Liu
J Zhang
JA Bueren-Calabuig
JA Maier
JP Ryckaert
L Riccardi
M Anandapadamanaban
M Sanson
MEJ Newman
OA Stasyuk
PF Varela
PRL Markwick
Q Wang
R Zhu
RW Floyd
S Lu
S Lu
S Lu
S Lu
S Lu
S Lu
S Mitternacht
S Mitternacht
S Zhou
SJ Wodak
SP Wilkinson
T Darden
T Xie
W Singh
W Yang
W Zhang
W Zhou
W-V Tee
WL Jorgensen
Y Zhang
Y-P Pang
YP Pang
Z Hao
Z Huang
ZW Tan
Publication venue
'Springer Science and Business Media LLC'
Publication date
Field of study
No full text
Crossref
Characterizing the conformational landscape of MDM2-binding p53 peptides using Molecular Dynamics simulations
Author
A Böttger
A Madhumalar
+49Â more
AA Adzhubei
B Efron
B Hess
BA Shoemaker
BL Grasberger
C Li
C Nick Pace
CJ Brown
CJ Brown
D Pal
DL Minor
G Bellesia
H Lee
H Shiheido
I Buch
JA Bueren-Calabuig
JM Krieger
K Michelsen
K Xiong
KH Khoo
KM ElSawy
L Hernychova
LM Espinoza-Fonseca
M Petukhov
M Wallace
M Wells
MM Dedmon
MP Ciemny
MV Botuyan
ND Younan
P Liu
P Romero
RB Berlow
S Kannan
S Mukherjee
S Pronk
SA Showalter
SG Dastidar
SJ Wei
SJ Wei
T Darden
T Terakawa
V Hornak
W Humphrey
W Kabsch
WG Touw
WL Jorgensen
Y Huang
YS Tan
Publication venue
'Springer Science and Business Media LLC'
Publication date
Field of study
No full text
Crossref
How phosphorylation influences E1 subunit pyruvate dehydrogenase: A computational study
Author
A Magistrato
A Onufriev
+62Â more
A Thibodeau
AA Polyansky
B Fu
BM King
BM King
BR Miller
DR Roe
E Chovancova
E Kolobova
E Saunier
E Suárez
EM Ciszak
ES Groban
F Chiappori
F Fogolari
F Musiani
F Seifert
G Solaini
GJ Sale
GJ Sale
H He
H Löwen
I-K Lee
IS Joung
J Chen
J Sgrignani
J Wang
J Zhu
JA Bueren-Calabuig
JA Maier
JH Bilgram
JH Missimer
JP Ryckaert
KJ Ahlqvist
LG Korotchkina
LG Korotchkina
LM Espinoza-Fonseca
M Fleck
M Kato
M Montenegro
MCCJC Ebert
MS Patel
N Homeyer
O Byron
P Arjunan
P Li
PW Stacpoole
RJ Loncharich
S Gone
S Grand Le
S Hezaveh
S Hezaveh
S Hezaveh
T Steinbrecher
TV Pyrkov
VI Bunik
W Humphrey
W Lehman
WL Jorgensen
X Sheng
Y Zhou
Y Zhou
Publication venue
'Springer Science and Business Media LLC'
Publication date
Field of study
No full text
Crossref
A comparative study of cold- and warm-adapted Endonucleases A using sequence analyses and molecular dynamics simulations
Author
A Amadei
A Siglioccolo
+67Â more
AO SmalĂĄs
B Altermark
B Altermark
B Altermark
B Hess
BJ Frey
Bjørn Olav Brandsdal
BO Brandsdal
C Böde
C Gerday
C Gerday
C Li
C Struvay
D Georlette
D Van Der Spoel
Davide Bon
Davide Michetti
DJ Brenner
DK Agrafiotis
E Papaleo
E Papaleo
E Papaleo
E Papaleo
E Papaleo
E Papaleo
Elena Papaleo
F Martin-Garcia
F Sievers
G Feller
G Gianese
Geir Villy Isaksen
GN Feller
GV Isaksen
GV Isaksen
Ivano Eberini
J-P Ryckaert
JA Bueren-Calabuig
K Lindorff-Larsen
K V Brinda
K-C Hsia
KR Ă“skarsson
KS Siddiqui
KS Siddiqui
L Niiranen
LH Greene
LH Greene
M Bhattacharyya
M Tiberti
M Tiberti
Matteo Tiberti
N Foloppe
NJ Russell
PA Fields
PA Fields
PS Low
R Cavicchioli
R Cavicchioli
R Chiuri
R Martinez
S Henikoff
S Vishveshwara
SF Altschup
T Darden
T Lonhienne
U Gerike
WL Jorgensen
X Robert
Publication venue
'Public Library of Science (PLoS)'
Publication date
Field of study
No full text
Crossref
In silico structural characterization of protein targets for drug development against Trypanosoma cruzi
Author
A Bhattacharya
A Kryshtafovych
+83Â more
A Leaver-Fay
A Merlino
A Yaseen
AC GuimarĂŁes
Ana Carolina Ramos Guimaraes
B Hess
B NĂ©ron
B Pecoul
BP Pedersen
C Larkin MA
C Mirabello
C Toyoshima
Carlyle Ribeiro Lima
CB Moraes
DB Roche
E Schlagenhauf
EF Pettersen
F Noireau
G Bussi
HW Ng
I Romero
J Kyte
J Soding
J Söding
J Yang
J Yu
JA Bueren-Calabuig
JA Gomez Barroso
K Lindorff-Larsen
K Suhre
K-C Chou
K-C Chou
L Sacconnay
L Yatime
M Alves-Ferreira
M Beig
M Hoang Viet
M Kanehisa
M Mazumder
MP Magariños
MS Alphey
MY Galperin
Nicolas Carels
NM El-Sayed
P Daligaux
P Derreumaux
P Derreumaux
P Tuffery
PA Hubbard
Philippe Derreumaux
Pierre Tufféry
PVSZ Capriles
PW Rose
R Caspi
R Soysa
R Viotti
RD Finn
RL Krauth-Siegel
RML Queiroz
S Altschul
S Corradin
S Krieger
S Meiering
S Nosé
S Okuda
S Patterson
S Piana
S Pronk
SN Lavorato
SP Tiwari
SR Wilkinson
T Altman
T Darden
T Ishida
T Zhang
TD Otto
TJ Dolinsky
TJ Taylor
VB Saraiva
WL Jorgensen
Y Chebaro
Y Shen
YV Mishina
Publication venue
'Springer Science and Business Media LLC'
Publication date
Field of study
No full text
Crossref
Phosphorylation promotes binding affinity of Rap-Raf complex by allosteric modulation of switch loop dynamics
Author
A Ghosh
A Kapoor
+117Â more
A Kapoor
A Karshikoff
A Scrima
A Sethi
A Vergara-Jaque
AD Cox
AD Cox
AD MacKerell Jr.
AJ Lyons
AK Somavarapu
BJ Grant
C Frémin
C Herrmann
C Kiel
C Yan
C-D Hu
D Karasev
DK Schweppe
DK Simanshu
DL Altschuler
E Castellano
E Frische
F Chen
FG Alanazi
G Buhrman
G Hu
G Stetz
GJ Martyna
H Gohlke
H Kitayama
H Noguchi
H Sun
HJ Berendsen
HR Bourne
HR Mott
HR Mott
IA Prior
J Cherfils
J Downward
J Dundas
J Eargle
J Wang
J-B CĹ•echet
JA Bueren-Calabuig
JC Phillips
JD Graves
JH Raaijmakers
JL Bos
JL Bos
JL Bos
JL Bos
JL Jiménez
JL Smart
JR Johnson
JR Molina
K Sharma
L Zhang
L Zhang
LM Espinoza-Fonseca
LM Iakoucheva
M Bhattacharyya
M Girvan
M Gloerich
M LepšÄk
M Seeber
M Spoerner
MA Balsera
MA Cuendet
MR Kooistra
N Foloppe
N Homeyer
N Nassar
N Sahyoun
N Špacková
NM Glykos
P Das
P Rodriguez-Viciana
P Tuffery
PA Kollman
PI Koukos
PP Chakrabarti
PY Ting
RB Best
RD Gorham Jr.
RW Floyd
S Atwell
S Bunda
S Burendahl
S Genheden
S Genheden
S Li
S Lu
S Lu
S Lukman
S Matsunaga
S Menon
S Vemparala
SE Feller
SJ Cook
SK Fetics
SR Sprang
T Darden
T Hou
T Ohtsuka
T Okada
T Yang
TJ Dolinsky
U Essmann
VA Boussiotis
W Humphrey
WL Jorgensen
X Zhang
Y Gu
Y Yonezawa
Y-H Wong
Z Luo
Z-L Li
Publication venue
'Springer Science and Business Media LLC'
Publication date
Field of study
No full text
Crossref