Genetic mapping of quantitative trait loci associated with β-amylase and limit dextrinase activities and β-glucan and protein fraction contents in barley*

High malting quality of barley (Hordeum vulgare L.) relies on many traits, such as β-amylase and limit dextrinase activities and β-glucan and protein fraction contents. In this study, interval mapping was utilized to detect quantitative trait loci (QTLs) affecting these malting quality parameters using a doubled haploid (DH) population from a cross of CM72 (six-rowed) by Gairdner (two-rowed) barley cultivars. A total of nine QTLs for eight traits were mapped to chromosomes 3H, 4H, 5H, and 7H. Five of the nine QTLs mapped to chromosome 3H, indicating a possible role of loci on chromosome 3H on malting quality. The phenotypic variation accounted by individual QTL ranged from 8.08% to 30.25%. The loci of QTLs for β-glucan and limit dextrinase were identified on chromosomes 4H and 5H, respectively. QTL for hordeins was coincident with the region of silica eluate (SE) protein on 3HS, while QTLs for albumins, globulins, and total protein exhibited overlapping. One locus on chromosome 3H was found to be related to β-amylase, and two loci on chromosomes 5H and 7H were found to be associated with glutelins. The identification of these novel QTLs controlling malting quality may be useful for marker-assisted selection in improving barley malting quality

Assessment of genetic diversity by simple sequence repeat markers among forty elite varieties in the germplasm for malting barley breeding*

The genetic diversity and relationship among 40 elite barley varieties were analyzed based on simple sequence repeat (SSR) genotyping data. The amplified fragments from SSR primers were highly polymorphic in the barley accessions investigated. A total of 85 alleles were detected at 35 SSR loci, and allelic variations existed at 29 SSR loci. The allele number per locus ranged from 1 to 5 with an average of 2.4 alleles per locus detected from the 40 barley accessions. A cluster analysis based on the genetic similarity coefficients was conducted and the 40 varieties were classified into two groups. Seven malting barley varieties from China fell into the same subgroup. It was found that the genetic diversity within the Chinese malting barley varieties was narrower than that in other barley germplasm sources, suggesting the importance and feasibility of introducing elite genotypes from different origins for malting barley breeding in China

Biogeographic trends in Antarctic lake communities

The basic biogeographic zones proposed many years ago – the Subantarctic islands, Maritime Antarctica and Continental Antarctica – continue to hold up, though they cannot be seen as absolute dividers of biodiversity. For example, subantarctic Macquarie Island appears to be biogeographically separate from the islands of the Kerguelen Province, and on the continent there are species that are present in lakes of more than one zone. Furthermore, there are numerous lake environments that have yet to be investigated, and it is probable that some of these lakes could turn up surprises that will bring into question these basic divisions. An important question to be answered is whether these biogeographic zones reflect climate attributes, or whether they were moulded long ago by barriers to dispersal. Again, our imperfect knowledge of Antarctic lacustrine biogeography means that this question cannot at present be answered. However, as discussed elsewhere in this volume (Chown and Convey), there are indications of a strong biogeographical boundary for terrestrial species between the Maritime and Continental Antarctic zones. A palaeolimnological approach will assist in answering this question: understanding how Antarctic biogeography has developed through time will provide necessary insights into current distributions. A prime example is the occurrence of the copepod Boeckella poppei in Beaver Lake. Pugh et al. (2002) initially concluded that this species was an anthropogenic introduction, then Bayly et al. (2003) provided morphological evidence for long habitation in the area of Beaver Lake. Recent palaeolimnological work has shown that the species has been present in nearby Lake Terrasovoje for at least 9000 yrs (L. Cromer, A. Bissett, J. Gibson and K. Swadling, unpublished data). Even though this lake has only existed in the Holocene, cosmogenic exposure dates in the same area of exposed rock can exceed 106 years (D. Gore and D. White, personal communication). From these observations it can be concluded that Boeckella poppei has been associated with the Beaver Lake area for at least the entire Holocene and probably well back into the Pleistocene, and that its occurrence outside its ‘preferred’ biogeographical zone (Maritime Antarctica) is not a reflection of current climate, rather of history. The majority of our knowledge regarding Antarctic lacustrine biodiversity and biogeography has come from classic taxonomic studies, where the morphology (or biochemistry for bacteria) has been of greatest importance. In many cases this has led to questionable identification, correct identification of species is paramount if the true biodiversity and biogeography of Antarctica is to be deduced. It is only in the last few years that the more objective approach of molecular genetics has been applied to Antarctic lacustrine organisms, and then only for more cryptic groups, such as bacteria and cyanobacteria. As more samples and organisms are studied by these methods it is likely that new relationships between species distributions will be found. Due to the limited number of species in Antarctica (compared to more temperate zones), it may be possible in the future to record the make-up of selected genes of most, if not all, of the biota, which will allow more precise analysis. There is increasing evidence for endemism amongst the inhabitants of lakes both on the Antarctic continent and the subantarctic islands, from bacteria to crustacea. Use of molecular genetic techniques to identify more cryptic species will most likely add to the list of putative endemics. It is clear, however, that recent colonisation and current climate also play important roles in the distribution of the biota, as most of the lakes in Antarctica are of relatively recent (Holocene) origin. Colonising species have to be adapted to transport from source areas, which can either involve inter- or intra-continental movement, as well as survival on arrival at potential habitat. Flexibility in nutritional and habitat requirements is an important factor in determining whether a species will be a successful coloniser. The buffering to environmental extremes provided by the liquid water habitat means that conditions further south will not be as harsh as those experienced by their terrestrial counterparts. As the climate changes in the future, it will be interesting to note the effects of these changes on the lacustrine biota. Will new species colonise the Antarctic Peninsula where temperatures are warming? In the longer term, the biogeography of Antarctic lakes will continue to be dynamic. New species will arrive, others will become extinct. The biogeographic zones long-proposed may continue to hold, though more precise knowledge of current distributions and responses to climate change may refine our view.MICROMAT, LAQUA