12,385 research outputs found
A new cellular automata model for city traffic
We present a new cellular automata model of vehicular traffic in cities by
combining ideas borrowed from the Biham-Middleton-Levine (BML) model of city
traffic and the Nagel-Schreckenberg (NaSch) model of highway traffic. The model
exhibits a dynamical phase transition to a completely jammed phase at a
critical density which depends on the time periods of the synchronized signals.Comment: 6 pages, 5 figures, uses Springer Macros 'lncse', to appear in
"Traffic and Granular Flow '99: Social, Traffic, and Granular Dynamics"
edited by D. Helbing, H. J. Herrmann, M. Schreckenberg, and D. E. Wolf
(Springer, Berlin
Flow properties of driven-diffusive lattice gases: theory and computer simulation
We develop n-cluster mean-field theories (0 < n < 5) for calculating the flow
properties of the non-equilibrium steady-states of the Katz-Lebowitz-Spohn
model of the driven diffusive lattice gas, with attractive and repulsive
inter-particle interactions, in both one and two dimensions for arbitrary
particle densities, temperature as well as the driving field. We compare our
theoretical results with the corresponding numerical data we have obtained from
the computer simulations to demonstrate the level of accuracy of our
theoretical predictions. We also compare our results with those for some other
prototype models, notably particle-hopping models of vehicular traffic, to
demonstrate the novel qualitative features we have observed in the
Katz-Lebowitz-Spohn model, emphasizing, in particular, the consequences of
repulsive inter-particle interactions.Comment: 12 RevTex page
Distribution of dwell times of a ribosome: effects of infidelity, kinetic proofreading and ribosome crowding
Ribosome is a molecular machine that polymerizes a protein where the sequence
of the amino acid residues, the monomers of the protein, is dictated by the
sequence of codons (triplets of nucleotides) on a messenger RNA (mRNA) that
serves as the template. The ribosome is a molecular motor that utilizes the
template mRNA strand also as the track. Thus, in each step the ribosome moves
forward by one codon and, simultaneously, elongates the protein by one amino
acid. We present a theoretical model that captures most of the main steps in
the mechano-chemical cycle of a ribosome. The stochastic movement of the
ribosome consists of an alternating sequence of pause and translocation; the
sum of the durations of a pause and the following translocation is the time of
dwell of the ribosome at the corresponding codon. We derive the analytical
expression for the distribution of the dwell times of a ribosome in our model.
Whereever experimental data are available, our theoretical predictions are
consistent with those results. We suggest appropriate experiments to test the
new predictions of our model, particularly, the effects of the quality control
mechanism of the ribosome and that of their crowding on the mRNA track.Comment: This is an author-created, un-copyedited version of an article
accepted for publication in Physical Biology. IOP Publishing Ltd is not
responsible for any errors or omissions in this version of the manuscript or
any version derived from it. The definitive publisher authenticated version
is available online at DOI:10.1088/1478-3975/8/2/02600
Collective traffic-like movement of ants on a trail: dynamical phases and phase transitions
The traffic-like collective movement of ants on a trail can be described by a
stochastic cellular automaton model. We have earlier investigated its unusual
flow-density relation by using various mean field approximations and computer
simulations. In this paper, we study the model following an alternative
approach based on the analogy with the zero range process, which is one of the
few known exactly solvable stochastic dynamical models. We show that our theory
can quantitatively account for the unusual non-monotonic dependence of the
average speed of the ants on their density for finite lattices with periodic
boundary conditions. Moreover, we argue that the model exhibits a continuous
phase transition at the critial density only in a limiting case. Furthermore,
we investigate the phase diagram of the model by replacing the periodic
boundary conditions by open boundary conditions.Comment: 8 pages, 6 figure
Time-resolved measurement of single pulse femtosecond laser-induced periodic surface structure formation
Time-resolved diffraction microscopy technique has been used to observe the
formation of laser-induced periodic surface structures (LIPSS) from the
interaction of a single femtosecond laser pulse (pump) with a nano-scale groove
mechanically formed on a single-crystal Cu substrate. The interaction dynamics
(0-1200 ps) was captured by diffracting a time-delayed, frequency-doubled pulse
from nascent LIPSS formation induced by the pump with an infinity-conjugate
microscopy setup. The LIPSS ripples are observed to form sequentially outward
from the groove edge, with the first one forming after 50 ps. A 1-D analytical
model of electron heating and surface plasmon polariton (SPP) excitation
induced by the interaction of incoming laser pulse with the groove edge
qualitatively explains the time-evloution of LIPSS formation.Comment: 4 pages, 5 figure
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