Theory of Single File Diffusion in a Force Field

The dynamics of hard-core interacting Brownian particles in an external potential field is studied in one dimension. Using the Jepsen line we find a very general and simple formula relating the motion of the tagged center particle, with the classical, time dependent single particle reflection ${\cal R}$ and transmission ${\cal T}$ coefficients. Our formula describes rich physical behaviors both in equilibrium and the approach to equilibrium of this many body problem.Comment: 4 Phys. Rev. page

A Study on the Noise Threshold of Fault-tolerant Quantum Error Correction

Quantum circuits implementing fault-tolerant quantum error correction (QEC) for the three qubit bit-flip code and five-qubit code are studied. To describe the effect of noise, we apply a model based on a generalized effective Hamiltonian where the system-environment interactions are taken into account by including stochastic fluctuating terms in the system Hamiltonian. This noise model enables us to investigate the effect of noise in quantum circuits under realistic device conditions and avoid strong assumptions such as maximal parallelism and weak storage errors. Noise thresholds of the QEC codes are calculated. In addition, the effects of imprecision in projective measurements, collective bath, fault-tolerant repetition protocols, and level of parallelism in circuit constructions on the threshold values are also studied with emphasis on determining the optimal design for the fault-tolerant QEC circuit. These results provide insights into the fault-tolerant QEC process as well as useful information for designing the optimal fault-tolerant QEC circuit for particular physical implementation of quantum computer.Comment: 9 pages, 9 figures; to be submitted to Phys. Rev.

Diffusion of Tagged Particle in an Exclusion Process

We study the diffusion of tagged hard core interacting particles under the influence of an external force field. Using the Jepsen line we map this many particle problem onto a single particle one. We obtain general equations for the distribution and the mean square displacement of the tagged center particle valid for rather general external force fields and initial conditions. A wide range of physical behaviors emerge which are very different than the classical single file sub-diffusion $ \sim t^{1/2}$ found for uniformly distributed particles in an infinite space and in the absence of force fields. For symmetric initial conditions and potential fields we find $ = {{\cal R} (1 - {\cal R})\over 2 N {\it r} ^2} $ where $2 N$ is the (large) number of particles in the system, ${\cal R}$ is a single particle reflection coefficient obtained from the single particle Green function and initial conditions, and $r$ its derivative. We show that this equation is related to the mathematical theory of order statistics and it can be used to find even when the motion between collision events is not Brownian (e.g. it might be ballistic, or anomalous diffusion). As an example we derive the Percus relation for non Gaussian diffusion

Toolbox for analyzing finite two-state trajectories

In many experiments, the aim is to deduce an underlying multi-substate on-off kinetic scheme (KS) from the statistical properties of a two-state trajectory. However, the mapping of a KS into a two-state trajectory leads to the loss of information about the KS, and so, in many cases, more than one KS can be associated with the data. We recently showed that the optimal way to solve this problem is to use canonical forms of reduced dimensions (RD). RD forms are on-off networks with connections only between substates of different states, where the connections can have non-exponential waiting time probability density functions (WT-PDFs). In theory, only a single RD form can be associated with the data. To utilize RD forms in the analysis of the data, a RD form should be associated with the data. Here, we give a toolbox for building a RD form from a finite two-state trajectory. The methods in the toolbox are based on known statistical methods in data analysis, combined with statistical methods and numerical algorithms designed specifically for the current problem. Our toolbox is self-contained - it builds a mechanism based only on the information it extracts from the data, and its implementation on the data is fast (analyzing a 10^6 cycle trajectory from a thirty-parameter mechanism takes a couple of hours on a PC with a 2.66 GHz processor). The toolbox is automated and is freely available for academic research upon electronic request

A Stochastic Liouville Equation Approach for the Effect of Noise in Quantum Computations

We propose a model based on a generalized effective Hamiltonian for studying the effect of noise in quantum computations. The system-environment interactions are taken into account by including stochastic fluctuating terms in the system Hamiltonian. Treating these fluctuations as Gaussian Markov processes with zero mean and delta function correlation times, we derive an exact equation of motion describing the dissipative dynamics for a system of n qubits. We then apply this model to study the effect of noise on the quantum teleportation and a generic quantum controlled-NOT (CNOT) gate. For the quantum CNOT gate, we study the effect of noise on a set of one- and two-qubit quantum gates, and show that the results can be assembled together to investigate the quality of a quantum CNOT gate operation. We compute the averaged gate fidelity and gate purity for the quantum CNOT gate, and investigate phase, bit-flip, and flip-flop errors during the CNOT gate operation. The effects of direct inter-qubit coupling and fluctuations on the control fields are also studied. We discuss the limitations and possible extensions of this model. In sum, we demonstrate a simple model that enables us to investigate the effect of noise in arbitrary quantum circuits under realistic device conditions.Comment: 36 pages, 6 figures; to be submitted to Phys. Rev.

Nonequilibrium spectral diffusion due to laser heating in stimulated photon echo spectroscopy of low temperature glasses

A quantitative theory is developed, which accounts for heating artifacts in three-pulse photon echo (3PE) experiments. The heat diffusion equation is solved and the average value of the temperature in the focal volume of the laser is determined as a function of the 3PE waiting time. This temperature is used in the framework of nonequilibrium spectral diffusion theory to calculate the effective homogeneous linewidth of an ensemble of probe molecules embedded in an amorphous host. The theory fits recently observed plateaus and bumps without introducing a gap in the distribution function of flip rates of the two-level systems or any other major modification of the standard tunneling model.Comment: 10 pages, Revtex, 6 eps-figures, accepted for publication in Phys. Rev.

Optimal number of pigments in photosynthetic complexes

We study excitation energy transfer in a simple model of photosynthetic complex. The model, described by Lindblad equation, consists of pigments interacting via dipole-dipole interaction. Overlapping of pigments induces an on-site energy disorder, providing a mechanism for blocking the excitation transfer. Based on the average efficiency as well as robustness of random configurations of pigments, we calculate the optimal number of pigments that should be enclosed in a pigment-protein complex of a given size. The results suggest that a large fraction of pigment configurations are efficient as well as robust if the number of pigments is properly chosen. We compare optimal results of the model to the structure of pigment-protein complexes as found in nature, finding good agreement.Comment: 20 pages, 7 figures; v2.: new appendix, published versio

Coherence correlations in the dissipative two-state system

We study the dynamical equilibrium correlation function of the polaron-dressed tunneling operator in the dissipative two-state system. Unlike the position operator, this coherence operator acts in the full system-plus-reservoir space. We calculate the relevant modified influence functional and present the exact formal expression for the coherence correlations in the form of a series in the number of tunneling events. For an Ohmic spectral density with the particular damping strength $K=1/2$, the series is summed in analytic form for all times and for arbitrary values of temperature and bias. Using a diagrammatic approach, we find the long-time dynamics in the regime $K<1$. In general, the coherence correlations decay algebraically as $t^{-2K}$ at T=0. This implies that the linear static susceptibility diverges for $K\le 1/2$ as $T\to 0$, whereas it stays finite for $K>1/2$ in this limit. The qualitative differences with respect to the asymptotic behavior of the position correlations are explained.Comment: 19 pages, 4 figures, to be published in Phys. Rev.

Transport efficiency in topologically disordered networks with environmentally induced diffusion

We study transport in topologically disordered networks that are subjected to an environment that induces classical diffusion. The dynamics is phenomenologically described within the framework of the recently introduced quantum stochastic walk, allowing to study the crossover between coherent transport and purely classical diffusion. We find that the coupling to the environment removes all effects of localization and quickly leads to classical transport. Furthermore, we find that on the level of the transport efficiency, the system can be well described by reducing it to a two-node network (a dimer).Comment: 10 pages, 7 figure

Path probability density functions for semi-Markovian random walks

In random walks, the path representation of the Green's function is an infinite sum over the length of path probability density functions (PDFs). Here we derive and solve, in Laplace space, the recursion relation for the n order path PDF for any arbitrarily inhomogeneous semi-Markovian random walk in a one-dimensional (1D) chain of L states. The recursion relation relates the n order path PDF to L/2 (round towards zero for an odd L) shorter path PDFs, and has n independent coefficients that obey a universal formula. The z transform of the recursion relation straightforwardly gives the generating function for path PDFs, from which we obtain the Green's function of the random walk, and derive an explicit expression for any path PDF of the random walk. These expressions give the most detailed description of arbitrarily inhomogeneous semi-Markovian random walks in 1D