50 research outputs found
Quantitative cross-linking/mass spectrometry reveals subtle protein conformational changes:QCLMS reveals protein conformational changes
Review of Matrix Metalloproteinases’ Effect on the Hybrid Dentin Bond Layer Stability and Chlorhexidine Clinical Use to Prevent Bond Failure
This review describes the relationship between dentin collagen hybrid bond layer degradation and the Matrix Metalloproteinases (MMPs) after their release by acid etch and rinse adhesives and self etching bonding adhesives that can reduce the bond stability over time. MMP-2, MMP-8 and MMP-9 are indicated as the active proteases that breakdown the collagen fibrils in the hybrid bond layer. Phosphoric acid in the acid etch and rinse bonding process and acid primers in the self etch process are implicated in the release of these proteases and their activation by several non-collagen proteins also released from dentin by the etching. MMPs are released in saliva by salivary glands, by cells in the gingival crevices to crevicular fluid and by pulpal odontoblasts cells to the dentinal fluids. These sources may affect the hybrid layer also. Evidence of the bond strength deterioration over time and the ability of Chlorhexidine to prevent bond deterioration by inhibiting MMP action are discussed. Dentin Bonding procedure utilizing Chlorhexidine for different application times and concentrations are being developed. The application of 2% Chlorhexidine to the phosphoric acid etch surface after rinsing off the acid is the only procedure that has been clinically tested for a longer period of time and shown to prevent bond strength degradation so far. The adoption of this procedure is recommended as means of improving bond stability at this time
On the Reproducibility of Label-Free Quantitative Cross-Linking/Mass Spectrometry
Quantitative cross-linking/mass spectrometry (QCLMS) is an emerging approach to study conformational changes of proteins and multi-subunit complexes. Distinguishing protein conformations requires reproducibly identifying and quantifying cross-linked peptides. Here we analyzed the variation between multiple cross-linking reactions using bis[sulfosuccinimidyl] suberate (BS3)-cross-linked human serum albumin (HSA) and evaluated how reproducible cross-linked peptides can be identified and quantified by LC-MS analysis. To make QCLMS accessible to a broader research community, we developed a workflow that integrates the established software tools MaxQuant for spectra preprocessing, Xi for cross-linked peptide identification, and finally Skyline for quantification (MS1 filtering). Out of the 221 unique residue pairs identified in our sample, 124 were subsequently quantified across 10 analyses with coefficient of variation (CV) values of 14% (injection replica) and 32% (reaction replica). Thus our results demonstrate that the reproducibility of QCLMS is in line with the reproducibility of general quantitative proteomics and we establish a robust workflow for MS1-based quantitation of cross-linked peptides
Realizing Stock Market Crashes: Stochastic Cusp Catastrophe Model of Returns under the Time-Varying Volatility
Estimation of Financial Agent-Based Models with Simulated Maximum Likelihood
This paper proposes a general computational framework for empirical estimation of financial agent based models, for which criterion functions do not have known analytical form. For this purpose, we adapt a nonparametric simulated maximum likelihood estimation based on kernel methods. Employing one of the most widely analysed heterogeneous agent models in the literature developed by Brock and Hommes (1998), we extensively test properties of the proposed estimator and its ability to recover parameters consistently and efficiently using simulations. Key empirical findings point us to the statistical insignificance of the switching coefficient but markedly significant belief parameters defining heterogeneous trading regimes with superiority of trend-following over contrarian strategies. In addition, we document slight proportional dominance of fundamentalists over trend following chartists in main world markets
Empirical Validation of Simulated Models through the GSL-div: An Illustrative Application
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Polymer concrete pipe for high-temperature corrosive environments
Polymer concrete is a composite material which has strength and durability characteristics greatly superior to those of Portland cement concrete and better durability than steel. Polymer concrete has been successfully tested in brine, flashing brine and steam at temperatures up to 260/sup 0/C. Exposures were as long as 960 days. Glass filament wound polymer concrete pipe was developed with excellent strength, low weight, and a cost comparable to or less than schedule 40 steel. Connections can be made with slip joints for low pressure applications and flanged joints for high pressure applications
Cost estimate for remedial action program for residences in the Grand Junction, Colorado area.
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In situ containment and stabilization of buried waste
The objective of the project was to develop, demonstrate and implement advanced grouting materials for the in-situ installation of impermeable, durable subsurface barriers and caps around waste sites and for the in-situ stabilization of contaminated soils. Specifically, the work was aimed at remediation of the Chemical Waste (CWL) and Mixed Waste Landfills (MWL) at Sandia National Laboratories (SNL) as part of the Mixed Waste Landfill Integrated Demonstration (MWLID). This report documents this project, which was conducted in two subtasks. These were (1) Capping and Barrier Grouts, and (2) In-situ Stabilization of Contaminated Soils. Subtask 1 examined materials and placement methods for in-situ containment of contaminated sites by subsurface barriers and surface caps. In Subtask 2 materials and techniques were evaluated for in-situ chemical stabilization of chromium in soil