Forestiera angustifolia Torr.

https://thekeep.eiu.edu/herbarium_specimens_byname/21091/thumbnail.jp

Fraxinus berlandieriana DC.

https://thekeep.eiu.edu/herbarium_specimens_byname/21237/thumbnail.jp

Fraxinus berlandieriana DC.

https://thekeep.eiu.edu/herbarium_specimens_byname/21237/thumbnail.jp

Sediment Deposition and Reworking: A Modeling Study using Isotopically Tagged Sediment Classes

A sediment transport model within the Regional Ocean Modeling System (ROMS) was used to examine how repeated cycles of deposition, erosion, and bioturbation influence flood and storm event bed character offshore of a significant fluvial source. Short-lived radioisotopes Beryllium-7 (7Be) and Thorium-234 (234Th) can be used as tracers of deposition and reworking on the continental shelf, and modeled profiles of these radioisotopes, along with simulated profiles of sediment bed grain size distributions, were analyzed for various model runs.The presence of an atmospherically derived radionuclide,7Be, in seafloor sedimentindicates terrestrial (riverine derived) sediment deposition offshore of a fluvial source.In contrast,234Th naturally occurs in seawater through the decay of its generally conservative parent, 238U, and its presence in the seabed indicates the recent suspension of sediment in oceanographic water. Simulated profiles of 7Be and 234Th weredirectly related to the flood and storm sequences used as model input.The model results showedthat the radioisotopic profiles are sensitive to the timing of 7Be input, phasing of wave and current energy, and intensity of bioturbation; complicating the relationship between simulated profiles andmodel input of flood and hydrodynamic forcing. Sediment grain size and geochronological tracers were used as markers of event beds for flood and storm deposition scenarios

Sediment Transport Model Including Short-Lived Radioisotopes: Model Description and Idealized Test Cases

Geochronologies derived from sediment cores in coastal locations are often used to infer event bed characteristics such as deposit thicknesses and accumulation rates. Such studies commonly use naturally occurring, short-lived radioisotopes, such as Beryllium-7 (Be-7) and Thorium-234 (Th-234), to study depositional and post-depositional processes. These radioisotope activities, however, are not generally represented in sediment transport models that characterize coastal flood and storm deposition with grain size patterns and deposit thicknesses. We modified the Community Sediment Transport Modeling System (CSTMS) to account for reactive tracers and used this capability to represent the behavior of these short-lived radioisotopes on the sediment bed. This paper describes the model and presents results from a set of idealized, one-dimensional (vertical) test cases. The model configuration represented fluvial deposition followed by periods of episodic storm resuspension. Sensitivity tests explored the influence on seabed radioisotope profiles by the intensities of bioturbation and wave resuspension and the thickness of fluvial deposits. The intensity of biodiffusion affected the persistence of fluvial event beds as evidenced by Be-7. Both resuspension and biodiffusion increased the modeled seabed inventory of Th-234. A thick fluvial deposit increased the seabed inventory of Be-7 and Th-234 but mixing over time greatly reduced the difference in inventory of Th-234 in fluvial deposits of different thicknesses

Determination of left ventricular wall thickness and muscle mass by intravenous digital subtractionangiocardiography: validation of the method

Left ventricular (LV) wall thickness and muscle mass are important measures of LV hypertrophy. In 24 patients LV end-diastolic wall thickness and muscle mass were determined (two observers) by digital subtraction angiocardiography (DSA) and conventional LV angiocardiography (LVA). Wall thickness was determined over the anterolateral wall of the left ventricle according to the technique of Rackley (method 1) or by planimetry (method 2). Seventeen patients were studied at rest and seven during dynamic exercise. Wall thickness correlated well between LVA and DSA; the best correlations were obtained by a combined subtraction mode using either method 1 or 2 (method 1, r≥0-80; method2, r≥0. 75). The standard error of estimate of the mean (SEE) was slightly lower for method 2 (≤ 10%) than for method 1 (≤ 13%). DSA significantly overestimated wall thickness by 5-7% with method 1 and underestimated by 12-14% with method 2. Muscle mass correlated well between LVA and DSA; the SEE was ≤ 15% for method 1 and≤ 12% for method 2. Overestimation of muscle mass by DSA was 7-11% with method 1 and underestimation was 13-15% with method 2.It is concluded that LV wall thickness can be determined accurately by DSA with an SEE ranging between 10 and 13%. Determination of LV muscle mass is slightly less accurate and the SEE is slightly larger ranging between 13 to 17%. With method 1, wall thickness and muscle mass were over estimated and with method 2 underestimate

Mitochondrial DNA insertion into nuclear chromosomes of maize

Abstract only availableEvery mitochondrion contains its own DNA separate from the nucleus. Over evolutionary time, most of the mitochondrial genes have moved to the nucleus so that now mitochondria require nuclear DNA to function. This type of transfer is an apparently ongoing process based on our observations that large pieces of the mitochondrial genome have been transferred to the nucleus. The focus of this study was to find the locations of mitochondrial DNA (mtDNA) on nuclear chromosomes in the B73 line of maize and compare these locations to other lines, using fluorescence in situ hybridization (FISH). First, cosmids previously made from a normal mtDNA genotype (NB) were maxi-prepped and then direct labeled with fluorescent tags. Next we prepared slides of B73 root tips and hybridized the labeled cosmids as well as marker probes to the cells. After hybridization, the slides were viewed and chromosome spread pictures were taken showing the location of the cosmids on the chromosomes. This process was then performed on root tip chromosomes from the Mo17, Black Mexican Sweet (BMS), and B37 lines. Twelve cosmids, representing about 71% of the mitochondrial genome, were examined and 8 different nuclear insertion sites were identified. These dispersed locations were predominantly near centromeres or telomeres on chromosomes 2 and 9. These new findings will make understanding the B73 nuclear genome sequence easier because now researchers will know what to expect at these locations and provide new information about the mechanism of mitochondrial genome transfer to the nucleus.NSF-REU Biology & Biochemistr

Analysis of the mtDNA insertion site on chromosome 9L in maize inbreds using fluorescence in situ hybridization

Abstract only availableAlmost all eukaryotic nuclear genomes show evidence of organellar DNA insertions originating from mitochondrial DNA (mtDNA) and chloroplast DNA (cpDNA). While the precise mechanisms of incorporation remain unknown, the phenomenon is frequent and ongoing in many species. In Zea mays, mtDNA insertions differ among inbred lines. A very large mtDNA insertion is found near the centromere of the long arm of chromosome 9 in the B73 inbred. This insertion contains the majority of the mitochondrial genome, while a similarly positioned insertion in the Mo17 inbred line is much smaller. We used recombinant inbred lines from the intermated B73 x Mo17 (IBM) population to determine if the insertions are indeed at the same position. We selected lines with recombination in this region of chromosome 9L. Using two mtDNA probes present in the insertions in both B73 and Mo17, we applied a chromosome painting technique called fluorescence in situ hybridization (FISH) to root-tip metaphase chromosomes and looked for the presence of the mtDNA site on chromosome 9L in the selected IBM lines. If the mtDNA insertion sites in B73 and Mo17 are at different locations, then at least one of the recombinant IBM lines should not display a mtDNA insertion at the chromosome 9 location. However, all of the recombinant IBM lines examined displayed the mtDNA insertion site on chromosome 9L. This indicates that the Mo17 and B73 insertions likely occupy the same region on the chromosome. Furthermore, this suggests that the large mtDNA insertion occurred recently in B73 at a pre-existing site present in both B73 and Mo17.NSF-REU Program in Biological Sciences & Biochemistr