Solvent coarse-graining and the string method applied to the hydrophobic collapse of a hydrated chain

Using computer simulations of over 100,000 atoms, the mechanism for the hydrophobic collapse of an idealized hydrated chain is obtained. This is done by coarse-graining the atomistic water molecule positions over 129,000 collective variables that represent the water density field and then using the string method in these variables to compute the minimum free energy pathway (MFEP) for the collapsing chain. The dynamical relevance of the MFEP (i.e. its coincidence with the mechanism of collapse) is validated a posteriori using conventional molecular dynamics trajectories. Analysis of the MFEP provides atomistic confirmation for the mechanism of hydrophobic collapse proposed by ten Wolde and Chandler. In particular, it is shown that lengthscale-dependent hydrophobic dewetting is the rate-limiting step in the hydrophobic collapse of the considered chain.Comment: 11 pages, 7 figures, including supporting informatio

Transition Temperature of a Uniform Imperfect Bose Gas

We calculate the transition temperature of a uniform dilute Bose gas with repulsive interactions, using a known virial expansion of the equation of state. We find that the transition temperature is higher than that of an ideal gas, with a fractional increase K_0(na^3)^{1/6}, where n is the density and a is the S-wave scattering length, and K_0 is a constant given in the paper. This disagrees with all existing results, analytical or numerical. It agrees exactly in magnitude with a result due to Toyoda, but has the opposite sign.Comment: Email correspondence to [email protected] ; 2 pages using REVTe

An Implication on the Pion Distribution Amplitude from the Pion-Photon Transition Form Factor with the New BABAR Data

The new BABAR data on the pion-photon transition form factor arouses people's new interests on the determination of pion distribution amplitude. To explain the data, we take both the leading valence quark state's and the non-valence quark states' contributions into consideration, where the valence quark part up to next-to-leading order is presented and the non-valence quark part is estimated by a phenomenological model based on its limiting behavior at both $Q^2\to 0$ and $Q^2\to\infty$. Our results show that to be consistent with the new BABAR data at large $Q^2$ region, a broader other than the asymptotic-like pion distribution amplitude should be adopted. The broadness of the pion distribution amplitude is controlled by a parameter $B$. It has been found that the new BABAR data at low and high energy regions can be explained simultaneously by setting $B$ to be around 0.60, in which the pion distribution amplitude is closed to the Chernyak-Zhitnitsky form.Comment: 19 pages, 6 figures, 2 tables. Slightly changed, references updated. To be published in Phys.Rev.

Improved approach to the heavy-to-light form factors in the light-cone QCD sum

A systematic analysis shows that the main uncertainties in the form factors are due to the twist-3 wave functions of the light mesons in the light-cone QCD sum rules. We propose an improved approach, in which the twist-3 wave functions doesn't make any contribution and therefore the possible pollution by them can be avoided, to re-examine $B \to \pi$ semileptonic form factors. Also, a comparison between the previous and our results from the light-cone QCD sum rules is made. Our method will be beneficial to the precise extracting of $\mid{V_{ub}}\mid$ from the experimental data on the processes $B \to \pi \ell \widetilde{\nu_\ell}$.Comment: New version to appear in PR

Momentum Distribution for Bosons with Positive Scattering Length in a Trap

The coordinate-momentum double distribution function $\rho ({\bf r}, {\bf p}) d^{3}rd^{3}p$ is calculated in the local density approximation for bosons with positive scattering length $a$ in a trap. The calculation is valid to the first order of $a$. To clarify the meaning of the result, it is compared for a special case with the double distribution function $\rho_{w}d^{3} rd^{3}p$ of Wigner.Comment: Latex fil

Pion Form Factor in the kTk_T Factorization Formalism

Based on the light-cone (LC) framework and the $k_T$ factorization formalism, the transverse momentum effects and the different helicity components' contributions to the pion form factor $F_{\pi}(Q^2)$ are recalculated. In particular, the contribution to the pion form factor from the higher helicity components ($\lambda_1+\lambda_2=\pm 1$), which come from the spin-space Wigner rotation, are analyzed in the soft and hard energy regions respectively. Our results show that the right power behavior of the hard contribution from the higher helicity components can only be obtained by fully keeping the $k_T$ dependence in the hard amplitude, and that the $k_T$ dependence in LC wave function affects the hard and soft contributions substantially. As an example, we employ a model LC wave function to calculate the pion form factor and then compare the numerical predictions with the experimental data. It is shown that the soft contribution is less important at the intermediate energy region.Comment: 21 pages, 4 figure

Heterogeneous responses of dorsal root ganglion neurons in neuropathies induced by peripheral nerve trauma and the antiretroviral drug stavudine

© 2014 The Authors. European Journal of Pain published by John Wiley & Sons Ltd on behalf of European Pain Federation - EFIC®. Funding sources E.K.B. was funded by a BBSRC PhD studentship. A.N., A.S.C.R. and T.P. were funded by a Wellcome Trust Strategic Award (London Pain Consortium; ref. 083259). A.S.C.R. and W.H. were funded by the Innovative Medicines Initiative Joint Undertaking (Europain; grant agreement no. 115007). We thank Pfizer for providing stavudine. Conflicts of interest None declared. Funded by BBSRC PhD studentship Wellcome Trust Strategic Award. Grant Number: 083259 Innovative Medicines Initiative Joint Undertaking. Grant Number: 115007Peer reviewedPublisher PD