MHD mode conversion in a stratified atmosphere

Mode conversion in the region where the sound and Alfven speeds are equal is a complex process, which has been studied both analytically and numerically, and has been seen in observations. In order to further the understanding of this process we set up a simple, one-dimensional model, and examine wave propagation through this system using a combination of analytical and numerical techniques. Simulations are carried out in a gravitationally stratified atmosphere with a uniform, vertical magnetic field for both isothermal and non-isothermal cases. For the non-isothermal case a temperature profile is chosen to mimic the steep temperature gradient encountered at the transition region. In all simulations, a slow wave is driven on the upper boundary, thus propagating down from low-beta to high-beta plasma across the mode-conversion region. In addition, a detailed analytical study is carried out where we predict the amplitude and phase of the transmitted and converted components of the incident wave as it passes through the mode-conversion region. A comparison of these analytical predictions with the numerical results shows good agreement, giving us confidence in both techniques. This knowledge may be used to help determine wave types observed and give insight into which modes may be involved in coronal heating.Comment: 7 pages, 5 figure

MHD Mode Conversion around a 2D Magnetic Null Point

Mode conversion occurs when a wave passes through a region where the sound and Alfven speeds are equal. At this point there is a resonance, which allows some of the incident wave to be converted into a different mode. We study this phenomenon in the vicinity of a two-dimensional, coronal null point. As a wave approaches the null it passes from low- to high-beta plasma, allowing conversion to take place. We simulate this numerically by sending in a slow magnetoacoustic wave from the upper boundary; as this passes through the conversion layer a fast wave can clearly be seen propagating ahead. Numerical simulations combined with an analytical WKB investigation allow us to determine and track both the incident and converted waves throughout the domain.Comment: 4 pages, 2 figure

Sunspot rotation. I. A consequence of flux emergence

Context. Solar eruptions and high flare activity often accompany the rapid rotation of sunspots. The study of sunspot rotation and the mechanisms driving this motion are therefore key to our understanding of how the solar atmosphere attains the conditions necessary for large energy release. Aims. We aim to demonstrate and investigate the rotation of sunspots in a 3D numerical experiment of the emergence of a magnetic flux tube as it rises through the solar interior and emerges into the atmosphere. Furthermore, we seek to show that the sub-photospheric twist stored in the interior is injected into the solar atmosphere by means of a definitive rotation of the sunspots. Methods. A numerical experiment is performed to solve the 3D resistive magnetohydrodynamic (MHD) equations using a Lagrangian-Remap code. We track the emergence of a toroidal flux tube as it rises through the solar interior and emerges into the atmosphere investigating various quantities related to both the magnetic field and plasma. Results. Through detailed analysis of the numerical experiment, we find clear evidence that the photospheric footprints or sunspots of the flux tube undergo a rotation. Significant vertical vortical motions are found to develop within the two polarity sources after the field emerges. These rotational motions are found to leave the interior portion of the field untwisted and twist up the atmospheric portion of the field. This is shown by our analysis of the relative magnetic helicity as a significant portion of the interior helicity is transported to the atmosphere. In addition, there is a substantial transport of magnetic energy to the atmosphere. Rotation angles are also calculated by tracing selected fieldlines; the fieldlines threading through the sunspot are found to rotate through angles of up to 353 degrees over the course of the experiment

Real-Time Cavity QED with Single Atoms

The combination of cold atoms and large coherent coupling enables investigations in a new regime in cavity QED with single-atom trajectories monitored in real time with high signal-to-noise ratio. The underlying “vacuum-Rabi” splitting is clearly reflected in the frequency dependence of atomic transit signals recorded atom by atom, with evidence for mechanical light forces for intracavity photon number <1. The nonlinear optical response of one atom in a cavity is observed to be in accord with the one-atom quantum theory but at variance with semiclassical predictions

A gas-liquid solid phase peptide and protein sequenator

A new miniaturized protein and peptide sequenator has been constructed which uses gas phase reagents at the coupling and cleavage steps of the Edman degradation. The sample is embedded in a matrix of Polybrene dried onto a porous glass fiber disc located in a small cartridge-style reaction cell. The protein or peptide, though not covalently attached to the support, is essentially immobile throughout the degradative cycle, since only relatively apolar, liquid phase solvents pass through the cell. This instrument can give useful sequence data on as little as 5 pmol or protein, can perform extended sequence runs (greater than 30 residues) on subnanomole quantities of proteins purified by sodium dodecyl sulfate-polyacrylamide gel electrophoresis, and can sequence hydrophobic peptides to completion. The sequenator is characterized by a high repetitive yield during the degradation, low reagent consumption, low maintenance requirements, and a degradative cycle time of only 50 min using a complete double cleavage program

Organic matter in sea water; An evaluation of various methods for isolation

Five methods of isolating organic materials from salt solutions are evaluated for applicability in separating organic and inorganic constituents of sea water. A C14-labeled aged algae culture was used as a test solution to determine the effectiveness of various methods of isolating total dissolved organic material. Organic compounds, known to be involved in biological metabolism, were also added to natural sea water to determine the effectiveness of various methods in isolation...

Determination of inorganic phosphate in sea water by an iso-butanol extraction procedure

A method is described for the determination of inorganic phosphate in sea water by extraction of the phosphomolybdate complex into iso-butanol and by reduction in the organic phase with stannous chloride. The color does not fade in 75 minutes. Arsenic and silicate, in amounts ordinarily encountered in sea water, do not interfere. The method is an order of magnitude more sensitive than others· in current use and has the same relative accuracy

Discriminating cool-water from warm-water carbonates and their diagenetic environments using element geochemistry: the Oligocene Tikorangi Formation (Taranaki Basin) and the dolomite effect

Fields portrayed within bivariate element plots have been used to distinguish between carbonates formed in warm- (tropical) water and cool- (temperate) water depositional settings. Here, element concentrations (Ca, Mg, Sr, Na, Fe, and Mn) have been determined for the carbonate fraction of bulk samples from the late Oligocene Tikorangi Formation, a subsurface, mixed dolomite-calcite, cool-water limestone sequence in Taranaki Basin, New Zealand. While the occurrence of dolomite is rare in New Zealand Cenozoic carbonates, and in cool-water carbonates more generally, the dolomite in the Tikorangi carbonates is shown to have a dramatic effect on the "traditional" positioning of cool-water limestone fields within bivariate element plots. Rare undolomitised, wholly calcitic carbonate samples in the Tikorangi Formation have the following average composition: Mg 2800 ppm; Ca 319 100 ppm; Na 800 ppm; Fe 6300 ppm; Sr 2400 ppm; and Mn 300 ppm. Tikorangi Formation dolomite-rich samples (>15% dolomite) have average values of: Mg 53 400 ppm; Ca 290 400 ppm; Na 4700 ppm; Fe 28 100 ppm; Sr 5400 ppm; and Mn 500 ppm. Element-element plots for dolomite-bearing samples show elevated Mg, Na, and Sr values compared with most other low-Mg calcite New Zealand Cenozoic limestones. The increased trace element contents are directly attributable to the trace element-enriched nature of the burial-derived dolomites, termed here the "dolomite effect". Fe levels in the Tikorangi Formation carbonates far exceed both modern and ancient cool-water and warm-water analogues, while Sr values are also higher than those in modern Tasmanian cool-water carbonates, and approach modern Bahaman warm-water carbonate values. Trace element data used in conjunction with more traditional petrographic data have aided in the diagenetic interpretation of the carbonate-dominated Tikorangi sequence. The geochemical results have been particularly useful for providing more definitive evidence for deep burial dolomitisation of the deposits under the influence of marine-modified pore fluids

Real-time cavity QED with single atoms

We report the first measurement of the real-time evolution of the complex field amplitude brought on by single atom transits. We show the variation in time of both quadrature amplitudes (simultaneously recorded) of the light transmitted through the cavity, as well the resultant optical phase for a single atom transit event. In this particular measurement, the cavity and laser were both detuned by 10 MHz from the Cs resonance