Low Energy Electronic Recoils and Single Electron Detection with a Liquid Xenon Proportional Scintillation Counter

Liquid xenon (LXe) is a well-studied detector medium to search for rare events in dark matter and neutrino physics. Two-phase xenon time projection chambers (TPCs) can detect electronic and nuclear recoils with energy down to kilo-electron volts (keV). In this paper, we characterize the response of a single-phase liquid xenon proportional scintillation counter (LXePSC), which produces electroluminescence directly in the liquid, to detect electronic recoils at low energies. Our design uses a thin (10 - 25 $\mu$m diameter), central anode wire in a cylindrical LXe target where ionization electrons, created from radiation particles, drift radially towards the anode, and electroluminescence is produced. Both the primary scintillation (S1) and electroluminescence (S2) are detected by photomultiplier tubes (PMTs) surrounding the LXe target. Up to 17 photons are produced per electron, obtained with a 10 $\mu$m diameter anode wire, allowing for the highly efficient detection of electronic recoils from beta decays of a tritium source down to roughly 1 keV. Single electrons, from photo-emission of the cathode wires, are observed at a gain of 1.8 photoelectrons (PE) per electron. The delayed signals following the S2 signals are dominated by single-photon-like hits, without evidence for electron signals observed in the two-phase xenon TPCs. We discuss the potential application of such a LXePSC for reactor neutrino detection via Coherent Elastic Neutrino Nucleus Scattering (CE$\nu$NS).Comment: 18 pages, 17 figure

An Interspecific Nicotiana Hybrid as a Useful and Cost-Effective Platform for Production of Animal Vaccines

The use of transgenic plants to produce novel products has great biotechnological potential as the relatively inexpensive inputs of light, water, and nutrients are utilised in return for potentially valuable bioactive metabolites, diagnostic proteins and vaccines. Extensive research is ongoing in this area internationally with the aim of producing plant-made vaccines of importance for both animals and humans. Vaccine purification is generally regarded as being integral to the preparation of safe and effective vaccines for use in humans. However, the use of crude plant extracts for animal immunisation may enable plant-made vaccines to become a cost-effective and efficacious approach to safely immunise large numbers of farm animals against diseases such as avian influenza. Since the technology associated with genetic transformation and large-scale propagation is very well established in Nicotiana, the genus has attributes well-suited for the production of plant-made vaccines. However the presence of potentially toxic alkaloids in Nicotiana extracts impedes their use as crude vaccine preparations. In the current study we describe a Nicotiana tabacum and N. glauca hybrid that expresses the HA glycoprotein of influenza A in its leaves but does not synthesize alkaloids. We demonstrate that injection with crude leaf extracts from these interspecific hybrid plants is a safe and effective approach for immunising mice. Moreover, this antigen-producing alkaloid-free, transgenic interspecific hybrid is vigorous, with a high capacity for vegetative shoot regeneration after harvesting. These plants are easily propagated by vegetative cuttings and have the added benefit of not producing viable pollen, thus reducing potential problems associated with bio-containment. Hence, these Nicotiana hybrids provide an advantageous production platform for partially purified, plant-made vaccines which may be particularly well suited for use in veterinary immunization programs

Finishing the euchromatic sequence of the human genome

The sequence of the human genome encodes the genetic instructions for human physiology, as well as rich information about human evolution. In 2001, the International Human Genome Sequencing Consortium reported a draft sequence of the euchromatic portion of the human genome. Since then, the international collaboration has worked to convert this draft into a genome sequence with high accuracy and nearly complete coverage. Here, we report the result of this finishing process. The current genome sequence (Build 35) contains 2.85 billion nucleotides interrupted by only 341 gaps. It covers ∼99% of the euchromatic genome and is accurate to an error rate of ∼1 event per 100,000 bases. Many of the remaining euchromatic gaps are associated with segmental duplications and will require focused work with new methods. The near-complete sequence, the first for a vertebrate, greatly improves the precision of biological analyses of the human genome including studies of gene number, birth and death. Notably, the human enome seems to encode only 20,000-25,000 protein-coding genes. The genome sequence reported here should serve as a firm foundation for biomedical research in the decades ahead

Evaluation of shallow-water carbonates as a seawater zinc isotope archive

•Primary marine carbonate phases are characterized by highly variable δ66Zn values.•Skeletal and microbial aragonite δ66Zn values are comparable to seawater δ66Zn.•Organically complexed zinc does not appear to contribute to carbonate-hosted zinc. Carbonate zinc (Zn) isotopes have increasingly been used to track changes in seawater Zn isotopic composition. A large body of recent work, in particular studies conducted under the GEOTRACES program, have added significantly to our knowledge of how Zn behaves in the water column. However, our understanding of how water-column Zn isotopic signals become incorporated into carbonate sediments is at a much more nascent stage. To help solve this issue, we have measured the Zn isotopic composition of modern surficial and core-top carbonate sediments and seawater from the Bahamas, Panama, and the Persian Gulf. Whereas modern Bahamian seawater has a δ66Zn of 0.14 ± 0.12‰ (2σ), Bahamian carbonates show a large range of δ66Zn—from −0.56 to 1.11‰. The δ66Zn of carbonate mud is ∼0.3‰ higher than that of the Bahamian seawater, potentially due to Zn isotopic fractionation during precipitation. Carbonate ooids and peloids and certain skeletal and microbial aragonites, including gastropods, green algae, stromatolites and precipitates associated with cyanobacterial (Dichothrix) filaments, have δ66Zn indistinguishable, within analytical error, from that of modern seawater. This suggests that these carbonate phases may be promising archives for seawater δ66Zn

Investigating controls on boron isotope ratios in shallow marine carbonates

The boron isotope-pH proxy has been widely used to reconstruct past ocean pH values. In both planktic foraminifera and corals, species-specific calibrations are required in order to reconstruct absolute values of pH, due to the prevalence of so-called vital effects — physiological modification of the primary environmental signals by the calcifying organisms. Shallow marine abiotic carbonate (e.g. ooids and cements) could conceivably avoid any such calibration requirement, and therefore provide a potentially useful archive for reconstructions in deep (pre-Cenozoic) time. However, shallow marine abiotic carbonates could also be affected by local shifts in pH caused by microbial photosynthesis and respiration, something that has up to now not been fully tested. In this study, we present boron isotope measurements from shallow modern marine carbonates, from the Bahama Bank and Belize to investigate the potential of using shallow water carbonates as pH archives, and to explore the role of microbial processes in driving nominally ‘abiogenic’ carbonate deposition. For Bahama bank samples, our boron-based pH estimates derived from a range of carbonate types (i.e. ooids, peloids, hardground cements, carbonate mud, stromatolitic micrite and calcified filament micrite) are higher than the estimated modern mean-annual seawater pH values for this region. Furthermore, the majority (73%) of our marine carbonate-based pH estimates fall out of the range of the estimated pre-industrial seawater pH values for this region. In shallow sediment cores, we did not observe a correlation between measured pore water pH and boron-derived pH estimates, suggesting boron isotope variability is a depositional rather than early diagenetic signal. For Belize reef cements, conversely, the pH estimates are lower than likely in situ seawater pH at the time of cement formation. This study indicates the potential for complications when using shallow marine non-skeletal carbonates as marine pH archives. In addition, variability in δ11B based pH estimates provides additional support for the idea that photosynthetic CO2 uptake plays a significant role in driving carbonate precipitation in a wide range of shallow water carbonates. •δ11B measured in a range of modern shallow marine carbonates.•Boron derived pH shows large variation compared to ambient pH.•Microbial mediation facilitates shallow marine carbonate precipitation.•Many types of shallow marine carbonates cannot be used as boron isotope pH archives

The primary function of RNA binding by the influenza A virus NS1 protein in infected cells: Inhibiting the 2′-5′ oligo (A) synthetase/RNase L pathway

The NS1 protein of influenza A virus (NS1A protein) is a multifunctional protein that counters cellular antiviral activities and is a virulence factor. Its N-terminal RNA-binding domain binds dsRNA. The only amino acid absolutely required for dsRNA binding is the R at position 38. To identify the role of this dsRNA-binding activity during influenza A virus infection, we generated a recombinant influenza A/Udorn/72 virus expressing an NS1A protein containing an RNA-binding domain in which R38 is mutated to A. This R38A mutant virus is highly attenuated, and the mutant NS1A protein, like the WT protein, is localized in the nucleus. Using the R38A mutant virus, we establish that dsRNA binding by the NS1A protein does not inhibit production of IFN-β mRNA. Rather, we demonstrate that the primary role of this dsRNA-binding activity is to protect the virus against the antiviral state induced by IFN-β. Pretreatment of A549 cells with IFN-β for 6 h did not inhibit replication of WT Udorn virus, whereas replication of R38A mutant virus was inhibited 1,000-fold. Using both RNA interference in A549 cells and mouse knockout cells, we show that this enhanced sensitivity to IFN-β-induced antiviral activity is due predominantly to the activation of RNase L. Because activation of RNase L is totally dependent on dsRNA activation of 2′-5′ oligo (A) synthetase (OAS), it is likely that the primary role of dsRNA binding by the NS1A protein in virus-infected cells is to sequester dsRNA away from 2′-5′ OAS