Milk production performance of Ankole crossbreds and Holstein Friesian cattle in different production environments of Rwanda

The aim of the study was to assess the productive performance of dairy cattle in three different agro-ecological zones of Rwanda: Congo-Nile/Western (WAZ), Central plateau/Central (CAZ), and Eastern plateau/East Agro-ecological Zones (EAZ). A single-visit multi-subject survey was conducted to obtain information on the dairy cattle performance from 51 farms. The breed groups were classified as Ankole x Holstein Friesian (AF), other Ankole crossbreds (AX), and pure Holstein Friesian (F). The F had higher (p < 0.001) milk yield than AF in all zones except EAZ and AF had higher (p < 0.0001) milk yield than AX in all zones. Across all zones, F produced 9 L more than AX and 6 L more than AF per day. Cows from EAZ had the highest average milk yield; however, it was not significantly different from CAZ. The difference that was observed between AF in EAZ and AF in the other two zones indicates that agro-ecological zones should not only be the target in livestock development activities rather additional factors such as feed availability at farm level, social economic, and market infrastructure should be considered in Rwanda

Milk production and lactation length in Ankole cattle and Ankole crossbreds in Rwanda

This study assessed daily milk yield (DMY), 100-day (MY100), and 305-day (MY305) milk yield, and lactation length (LL) in purebred Ankole cattle and Ankole crossbreds, and the influence of environmental factors on these traits. Milk yield data were obtained for 865 cows and 1234 lactations and analyzed using a mixed linear model. The overall least squares mean of DMY, MY100, and MY305 across breed groups was 2.7 L (N = 1234, SD = 1.7), 262 L (N = 959, SD = 176), and 759 L (N = 448, SD = 439), respectively, while the average lactation length was 256 days (N = 960, SD = 122). All factors included (breed group, season and year of calving, and parity) were significant for yield traits, except season of calving for MY305. First-parity cows had the lowest milk production, and fourth-parity cows the highest. For all traits, pure Ankole cows had the lowest milk yield. Among the crossbreds, there was no significant difference between Ankole x Friesian, Ankole-Jersey mother x Sahiwal sire, and Ankole-Sahiwal mother x Jersey sire, or between Ankole x Sahiwal and Ankole-Sahiwal mother x Sahiwal sire. It was concluded that Ankole crosses with Friesian or Jersey can be beneficial, even under a management system of limited nutrition as in Rwanda

The effect of high temperature and humidity on milk yield in Ankole and crossbred cows

Tropical regions are characterized by high temperature and humidity across the year. At high values of temperature humidity index (THI), there is a risk of heat stress leading to lower milk yield. The objective of this study was to describe the effect of season and the effect of maximum daily THI on milk yield of that day in purebred Ankole and Ankole-Friesian, Ankole-Jersey and Ankole-Sahiwal crosses in a tropical climate. In total, 53,730 records of daily milk yield from 183 cows in Rwanda were analyzed. The results showed that THI had a negative effect on daily milk yield above a threshold, but the effect was small (-0.11 kg milk/THI unit at most). Purebred Ankole cows had the lowest daily milk yield and the lowest threshold (THI mean 66), as compared to the crossbreds (THI mean 68-69). Ankole-Friesian had a steeper decline in daily milk yield above the threshold than Ankole. The crossbreds, especially Ankole-Friesian, had higher daily milk yield than purebred Ankole also at very high THI. The results indicate some differences between breed groups in the way of coping with a hot and humid climate and raise questions about dairy cows' adaptation to such a climate

Data_Sheet_2_Genome-Wide Association Study of Growth Performance and Immune Response to Newcastle Disease Virus of Indigenous Chicken in Rwanda.docx

A chicken genome has several regions with quantitative trait loci (QTLs). However, replication and confirmation of QTL effects are required particularly in African chicken populations. This study identified single nucleotide polymorphisms (SNPs) and putative genes responsible for body weight (BW) and antibody response (AbR) to Newcastle disease (ND) in Rwanda indigenous chicken (IC) using genome-wide association studies (GWAS). Multiple testing was corrected using chromosomal false detection rates of 5 and 10% for significant and suggestive thresholds, respectively. BioMart data mining and variant effect predictor tools were used to annotate SNPs and candidate genes, respectively. A total of four significant SNPs (rs74098018, rs13792572, rs314702374, and rs14123335) significantly (p ≤ 7.6E−5) associated with BW were identified on chromosomes (CHRs) 8, 11, and 19. In the vicinity of these SNPs, four genes such as pre-B-cell leukaemia homeobox 1 (PBX1), GPATCH1, MPHOSPH6, and MRM1 were identified. Four other significant SNPs (rs314787954, rs13623466, rs13910430, and rs737507850) all located on chromosome 1 were strongly (p ≤ 7.6E−5) associated with chicken antibody response to ND. The closest genes to these four SNPs were cell division cycle 16 (CDC16), zinc finger, BED-type containing 1 (ZBED1), myxovirus (influenza virus) resistance 1 (MX1), and growth factor receptor bound protein 2 (GRB2) related adaptor protein 2 (GRAP2). Besides, other SNPs and genes suggestively (p ≤ 1.5E−5) associated with BW and antibody response to ND were reported. This work offers a useful entry point for the discovery of causative genes accountable for essential QTLs regulating BW and antibody response to ND traits. Results provide auspicious genes and SNP-based markers that can be used in the improvement of growth performance and ND resistance in IC populations based on gene-based and/or marker-assisted breeding selection.</p

Data_Sheet_1_Genome-Wide Association Study of Growth Performance and Immune Response to Newcastle Disease Virus of Indigenous Chicken in Rwanda.zip

A chicken genome has several regions with quantitative trait loci (QTLs). However, replication and confirmation of QTL effects are required particularly in African chicken populations. This study identified single nucleotide polymorphisms (SNPs) and putative genes responsible for body weight (BW) and antibody response (AbR) to Newcastle disease (ND) in Rwanda indigenous chicken (IC) using genome-wide association studies (GWAS). Multiple testing was corrected using chromosomal false detection rates of 5 and 10% for significant and suggestive thresholds, respectively. BioMart data mining and variant effect predictor tools were used to annotate SNPs and candidate genes, respectively. A total of four significant SNPs (rs74098018, rs13792572, rs314702374, and rs14123335) significantly (p ≤ 7.6E−5) associated with BW were identified on chromosomes (CHRs) 8, 11, and 19. In the vicinity of these SNPs, four genes such as pre-B-cell leukaemia homeobox 1 (PBX1), GPATCH1, MPHOSPH6, and MRM1 were identified. Four other significant SNPs (rs314787954, rs13623466, rs13910430, and rs737507850) all located on chromosome 1 were strongly (p ≤ 7.6E−5) associated with chicken antibody response to ND. The closest genes to these four SNPs were cell division cycle 16 (CDC16), zinc finger, BED-type containing 1 (ZBED1), myxovirus (influenza virus) resistance 1 (MX1), and growth factor receptor bound protein 2 (GRB2) related adaptor protein 2 (GRAP2). Besides, other SNPs and genes suggestively (p ≤ 1.5E−5) associated with BW and antibody response to ND were reported. This work offers a useful entry point for the discovery of causative genes accountable for essential QTLs regulating BW and antibody response to ND traits. Results provide auspicious genes and SNP-based markers that can be used in the improvement of growth performance and ND resistance in IC populations based on gene-based and/or marker-assisted breeding selection.</p