Geospatial analysis of California strawberry fields reveals regional differences in crop rotation patterns and the potential for lengthened rotations at current levels of production

Strawberries in California are grown in specific coastal areas where land is scarce and climate change threatens future production. Strawberry growers are under pressure to adopt sustainable production strategies such as crop rotation, but this practice requires more land than back-to-back planting. The objectives of this research were to quantify the rate of crop rotation across the three main strawberry producing regions in California (Ventura, Santa Maria, and Monterey Bay), and evaluate geographic and edaphic influences on crop rotation. All strawberry fields in the main strawberry producing regions of California were identified by satellite imagery and manual inspection for the years 2017 through 2022. ArcGIS Pro was used to outline each strawberry field and compare among years to determine the period between successive strawberry plantings. Edaphic characteristics and shapefiles for surrounding fields were retrieved from public datasets. The three regions significantly differed in their rates of crop rotation. On average, 95, 52, and 25% of strawberry hectares were rotated each year in the Monterey Bay, Santa Maria, and Ventura regions, respectively. Shorter rotation lengths were associated with reduced distance from the ocean and soil with a higher percentage of sand. Based on 2 years of disease surveys, fields infested with Macrophomina phaseolina tended to be further inland than fields infested with Fusarium oxysporum f. sp. fragariae in the Monterey Bay region. This study determined that distance from the ocean and soil texture are associated with crop rotation lengths in California strawberry production. Enough land may be available in the Santa Maria and Monterey Bay regions for growers to lengthen crop rotations, but water quality, social networks, and financial considerations that were outside the scope of this study are likely to limit the ability for strawberry growers to maximize the duration of crop rotations

The state-of-the-art determination of urinary nucleosides using chromatographic techniques “hyphenated” with advanced bioinformatic methods

Over the last decade metabolomics has gained increasing popularity and significance in life sciences. Together with genomics, transcriptomics and proteomics, metabolomics provides additional information on specific reactions occurring in humans, allowing us to understand some of the metabolic pathways in pathological processes. Abnormal levels of such metabolites as nucleosides in the urine of cancer patients (abnormal in relation to the levels observed in healthy volunteers) seem to be an original potential diagnostic marker of carcinogenesis. However, the expectations regarding the diagnostic value of nucleosides may only be justified once an appropriate analytical procedure has been applied for their determination. The achievement of good specificity, sensitivity and reproducibility of the analysis depends on the right choice of the phases (e.g. sample pretreatment procedure), the analytical technique and the bioinformatic approach. Improving the techniques and methods applied implies greater interest in exploration of reliable diagnostic markers. This review covers the last 11 years of determination of urinary nucleosides conducted with the use of high-performance liquid chromatography in conjunction with various types of detection, sample pretreatment methods as well as bioinformatic data processing procedures

Regulation of STIM1 and SOCE by the Ubiquitin-Proteasome System (UPS)

The ubiquitin proteasome system (UPS) mediates the majority of protein degradation in eukaryotic cells. The UPS has recently emerged as a key degradation pathway involved in synapse development and function. In order to better understand the function of the UPS at synapses we utilized a genetic and proteomic approach to isolate and identify novel candidate UPS substrates from biochemically purified synaptic membrane preparations. Using these methods, we have identified Stromal interacting molecule 1 (STIM1). STIM1 is as an endoplasmic reticulum (ER) calcium sensor that has been shown to regulate store-operated Ca2+ entry (SOCE). We have characterized STIM1 in neurons, finding STIM1 is expressed throughout development with stable, high expression in mature neurons. As in non-excitable cells, STIM1 is distributed in a membranous and punctate fashion in hippocampal neurons. In addition, a population of STIM1 was found to exist at synapses. Furthermore, using surface biotinylation and live-cell labeling methods, we detect a subpopulation of STIM1 on the surface of hippocampal neurons. The role of STIM1 as a regulator of SOCE has typically been examined in non-excitable cell types. Therefore, we examined the role of the UPS in STIM1 and SOCE function in HEK293 cells. While we find that STIM1 is ubiquitinated, its stability is not altered by proteasome inhibitors in cells under basal conditions or conditions that activate SOCE. However, we find that surface STIM1 levels and thapsigargin (TG)-induced SOCE are significantly increased in cells treated with proteasome inhibitors. Additionally, we find that the overexpression of POSH (Plenty of SH3′s), an E3 ubiquitin ligase recently shown to be involved in the regulation of Ca2+ homeostasis, leads to decreased STIM1 surface levels. Together, these results provide evidence for previously undescribed roles of the UPS in the regulation of STIM1 and SOCE function

Subcellular optogenetic inhibition of G proteins generates signaling gradients and cell migration

Cells sense gradients of extracellular cues and generate polarized responses such as cell migration and neurite initiation. There is static information on the intracellular signaling molecules involved in these responses, but how they dynamically orchestrate polarized cell behaviors is not well understood. A limitation has been the lack of methods to exert spatial and temporal control over specific signaling molecules inside a living cell. Here we introduce optogenetic tools that act downstream of native G protein–coupled receptor (GPCRs) and provide direct control over the activity of endogenous heterotrimeric G protein subunits. Light-triggered recruitment of a truncated regulator of G protein signaling (RGS) protein or a Gβγ-sequestering domain to a selected region on the plasma membrane results in localized inhibition of G protein signaling. In immune cells exposed to spatially uniform chemoattractants, these optogenetic tools allow us to create reversible gradients of signaling activity. Migratory responses generated by this approach show that a gradient of active G protein αi and βγ subunits is sufficient to generate directed cell migration. They also provide the most direct evidence so for a global inhibition pathway triggered by Gi signaling in directional sensing and adaptation. These optogenetic tools can be applied to interrogate the mechanistic basis of other GPCR-modulated cellular functions

The marine actinomycete genus Salinispora: a model organism for secondary metabolite discovery

This review covers the initial discovery of the marine actinomycete genus Salinispora through its development as a model for natural product research. A focus is placed on the novel chemical structures reported with reference to their biological activities and the synthetic and biosynthetic studies they have inspired. The time line of discoveries progresses from more traditional bioassay-guided approaches through the application of genome mining and genetic engineering techniques that target the products of specific biosynthetic gene clusters. This overview exemplifies the extraordinary biosynthetic diversity that can emanate from a narrowly defined genus and supports future efforts to explore marine taxa in the search for novel natural products

Community architecture : an evaluation the extent of user participation in the design of their dwellings in Sri Lankan urban low income communities

Provider based mass housing, as a policy, creates a major problem of personalization of dwellings. The present government also believes in provider based housing policy for urban low income communities. However, it shows that the support based community design paradiam all over the world always has encouraged the user decision-making power and user has authentically participated in the process oriented policy. In community Architectural practice, 3major themes can be identified: 1) Participation] user centered 2) Flexibility] concepts 3) Enablement as professional role. In this study, more concern is given about the participation them which increase the user control over his dwelling design. In the first chapter, concept of community architecture and status of each party and their relationship to each party is going to be discussed. In the second chapter, actual meaning of user participation and itsdeeppsychological relationship with the home as a meaning unauthentic place has-been discussed in terms of human existence. The third chapter consists of two parts, the first part discusses the shanty community in terms of socio-cultural and behavioral criteria and try to develop the theoretical perspective about the shanty dweller, and the second part of this chapter mostly concerns about the million housing programmed as support-based community design process and its structure and the limitations are going to be discussed. With the fourth chapter, two case studies under the million housing programmed are being invested and the purpose of comparison and broadening the idea of user participation. Mxicali project is selected to be discussed under the following important criteria: 1) Extent of user participation 2) Success in terms of architectural compositioning. Before this, the million housing programmed has been discussed in terms of political, economic & social concepts Further discuss oaf the extent of user participation towards place making will also I worthy attempt at the evaluation of the million housing programm

Carbon Source-Dependent Effects of Anaerobic Soil Disinfestation on Soil Microbiome and Suppression of Rhizoctonia solani AG-5 and Pratylenchus penetrans

The effect of carbon source on efficacy of anaerobic soil disinfestation (ASD) toward suppression of apple root infection by Rhizoctonia solani AG-5 and Pratylenchus penetrans was examined. Orchard grass (GR), rice bran (RB), ethanol (ET), composted steer manure (CM), and Brassica juncea seed meal (SM) were used as ASD carbon inputs, with plant assays conducted in natural and pasteurized orchard soils. Subsequent studies investigated the effect of GR application rate used in ASD on control of these pathogens. In general, apple root infection by R. solani AG-5 was significantly lower in ET, GR, RB, and SM ASD treatments compared with the control. Among different ASD treatments, apple seedling growth was significantly greater when GR or SM was used as the carbon input relative to all other ASD treatments. R. solani AG-5 DNA abundance was significantly reduced in all ASD treatments, regardless of amendment type, compared with the control. In independent experiments, ASD-GR was consistently superior to ASD-CM for limiting pathogen activity in soils. ASD treatment with a grass input rate of 20 t ha(-1) provided superior suppression of P. penetrans but grass application rate did not affect ASD efficacy in control of R. solani AG-5. The soil microbiome from ASD-GR-treated soils was clearly distinct from the control and ASD-CM-treated soils. In contrast, composition of the microbiome from control and ASD-CM-treated soils could not be differentiated. Comparative results from pasteurized and nonpasteurized soils suggest that there is potential for GR based ASD treatment to recruit microbial elements that persist over the anaerobic phase of soil incubation, which may functionally contribute to disease suppression. When ASD was conducted with GR, microbial diversity was markedly reduced relative to the control or ASD-CM soil suggesting that this parameter, typically associated with system resilience, was not instrumental to the function of ASD-induced soil suppressiveness