Why Microtubules run in Circles - Mechanical Hysteresis of the Tubulin Lattice

The fate of every eukaryotic cell subtly relies on the exceptional mechanical properties of microtubules. Despite significant efforts, understanding their unusual mechanics remains elusive. One persistent, unresolved mystery is the formation of long-lived arcs and rings, e.g. in kinesin-driven gliding assays. To elucidate their physical origin we develop a model of the inner workings of the microtubule's lattice, based on recent experimental evidence for a conformational switch of the tubulin dimer. We show that the microtubule lattice itself coexists in discrete polymorphic states. Curved states can be induced via a mechanical hysteresis involving torques and forces typical of few molecular motors acting in unison. This lattice switch renders microtubules not only virtually unbreakable under typical cellular forces, but moreover provides them with a tunable response integrating mechanical and chemical stimuli.Comment: 5 pages, 4 Movies in the Supplemen

A Solvable Model for Polymorphic Dynamics of Biofilaments

We investigate an analytically tractable toy model for thermally induced polymorphic dynamics of cooperatively rearranging biofilaments - like microtubules. The proposed 4 -block model, which can be seen as a coarse-grained approximation of the full polymorphic tube model, permits a complete analytical treatment of all thermodynamic properties including correlation functions and angular fourier mode distributions. Due to its mathematical tractability the model straightforwardly leads to some physical insights in recently discussed phenomena like the "length dependent persistence length". We show that a polymorphic filament can disguise itself as a classical worm like chain on small and on large scales and yet display distinct anomalous tell-tale features indicating an inner switching dynamics on intermediate length scales

Kinetics of non-ionic surfactant adsorption at a fluid-fluid interface from a micellar solution

The kinetics of non-ionic surfactant adsorption at a fluid-fluid interface from a micellar solution is considered theoretically. Our model takes into account the effect of micelle relaxation on the diffusion of the free surfactant molecules. It is shown that non-ionic surfactants undergo either a diffusion or a kinetically limited adsorption according to the characteristic relaxation time of the micelles. This gives a new interpretation for the observed dynamical surface tension of micellar solutions.Comment: 4 page

Renormalization Group in Quantum Mechanics

We establish the renormalization group equation for the running action in the context of a one quantum particle system. This equation is deduced by integrating each fourier mode after the other in the path integral formalism. It is free of the well known pathologies which appear in quantum field theory due to the sharp cutoff. We show that for an arbitrary background path the usual local form of the action is not preserved by the flow. To cure this problem we consider a more general action than usual which is stable by the renormalization group flow. It allows us to obtain a new consistent renormalization group equation for the action.Comment: 20 page

Crunching Biofilament Rings

We discuss a curious example for the collective mechanical behavior of coupled non-linear monomer units entrapped in a circular filament. Within a simple model we elucidate how multistability of monomer units and exponentially large degeneracy of the filament's ground state emerge as a collective feature of the closed filament. Surprisingly, increasing the monomer frustration, i.e., the bending prestrain within the circular filament, leads to a conformational softening of the system. The phenomenon, that we term polymorphic crunching, is discussed and applied to a possible scenario for membrane tube deformation by switchable dynamin or FtsZ filaments. We find an important role of cooperative inter-unit interaction for efficient ring induced membrane fission

Spin Hall effect of Photons in a Static Gravitational Field

Starting from a Hamiltonian description of the photon within the set of Bargmann-Wigner equations we derive new semiclassical equations of motion for the photon propagating in static gravitational field. These equations which are obtained in the representation diagonalizing the Hamiltonian at the order $\hbar$, present the first order corrections to the geometrical optics. The photon Hamiltonian shows a new kind of helicity-magnetotorsion coupling. However, even for a torsionless space-time, photons do not follow the usual null geodesic as a consequence of an anomalous velocity term. This term is responsible for the gravitational birefringence phenomenon: photons with distinct helicity follow different geodesics in a static gravitational field.Comment: 6 page

Equation of State of Looped DNA

We derive the equation of state of DNA under tension that features a loop. Such loops occur transiently during DNA condensation in the presence of multivalent ions or permanently through sliding protein linkers such as condensin. The force-extension relation of such looped-DNA modeled as a wormlike chain is calculated via path integration in the semiclassical limit. This allows us to rigorously determine the high stretching asymptotics. Notably the functional form of the force-extension curve resembles that of straight DNA, yet with a strongly renormalized apparent persistence length. We also present analogous results for DNA under tension with several protein-induced kinks and/or loops. That means that the experimentally extracted single-molecule elasticity does not necessarily only reflect the bare DNA stiffness, but can also contain additional contributions that depend on the overall chain conformation and length

Helices at Interfaces

Helically coiled filaments are a frequent motif in nature. In situations commonly encountered in experiments coiled helices are squeezed flat onto two dimensional surfaces. Under such 2-D confinement helices form "squeelices" - peculiar squeezed conformations often resembling looped waves, spirals or circles. Using theory and Monte-Carlo simulations we illuminate here the mechanics and the unusual statistical mechanics of confined helices and show that their fluctuations can be understood in terms of moving and interacting discrete particle-like entities - the "twist-kinks". We show that confined filaments can thermally switch between discrete topological twist quantized states, with some of the states exhibiting dramatically enhanced circularization probability while others displaying surprising hyperflexibility